undo workflow changes

sirius-ms · Jul 27, 2023 · 27d5606 · 27d5606
1 parent 9507e8d
commit 27d5606
Showing 1 changed file with 12 additions and 12 deletions.
diff --git a/.github/workflows/distribute.yaml b/.github/workflows/distribute.yaml
@@ -79,8 +79,8 @@ jobs:
 #
 #      - name: Sirius Run
 #        run: |
-#          TEMP_DIR="$(cd "$(dirname "sirius_cli/build/test/temp_results")"; pwd -P)/$(basename "sirius_cli/build/test/temp_results")"
-#          mkdir -p "${TEMP_DIR}" "${TEMP_DIR}/mgf_temp_output" "${TEMP_DIR}/mgf_temp_summary" "${TEMP_DIR}/ms_temp_output" "${TEMP_DIR}/ms_temp_summary" "${TEMP_DIR}/txt_temp_output" "${TEMP_DIR}/txt_temp_summary"
+#          TEMP_DIR="$(cd "$(dirname "sirius_cli/src/test/temp_results")"; pwd -P)/$(basename "sirius_cli/src/test/temp_results")"
+#          mkdir "${TEMP_DIR}" "${TEMP_DIR}/mgf_temp_output" "${TEMP_DIR}/mgf_temp_summary" "${TEMP_DIR}/ms_temp_output" "${TEMP_DIR}/ms_temp_summary" "${TEMP_DIR}/txt_temp_output" "${TEMP_DIR}/txt_temp_summary"
 #          DEMO_DIR="$(cd "$(dirname "sirius_doc/manual/demo-data")"; pwd -P)/$(basename "sirius_doc/manual/demo-data")"
 #          MGF_DATA="${DEMO_DIR}/mgf/laudanosine.mgf"
 #          MS_DATA="${DEMO_DIR}/ms/Bicuculline.ms"
@@ -106,7 +106,7 @@ jobs:
 #
 #      - name: Sirius MGF Test
 #        run: |
-#          RESULTS="sirius_cli/build/test/temp_results/"
+#          RESULTS="sirius_cli/src/test/temp_results/"
 #          OUTPUT="${RESULTS}mgf_temp_output/1_laudanosine_FEATURE_1/"
 #          SUMMARY="${RESULTS}mgf_temp_summary/1_laudanosine_FEATURE_1/"
 #          CANOPUS="${OUTPUT}canopus/"
@@ -132,7 +132,7 @@ jobs:
 #
 #      - name: Sirius MS Test
 #        run: |
-#          RESULTS="sirius_cli/build/test/temp_results/"
+#          RESULTS="sirius_cli/src/test/temp_results/"
 #          OUTPUT="${RESULTS}ms_temp_output/1_Bicuculline_Bicuculline/"
 #          SUMMARY="${RESULTS}ms_temp_summary/1_Bicuculline_Bicuculline/"
 #          CANOPUS="${OUTPUT}canopus/"
@@ -160,7 +160,7 @@ jobs:
 #
 #      - name: Sirius TXT Test
 #        run: |
-#          RESULTS="sirius_cli/build/test/temp_results/"
+#          RESULTS="sirius_cli/src/test/temp_results/"
 #          SUMMARY="${RESULTS}txt_temp_summary/1_unknown_/"
 #          if [ -d "${SUMMARY}" ]; then
 #            echo "Found result directory ${SUMMARY}..."
@@ -178,7 +178,7 @@ jobs:
 #
 #      - name: Sirius Run Cleanup
 #        run: |
-#          rm -r sirius_cli/build/test/temp_results
+#          rm -r sirius_cli/src/test/temp_results
 #
 #      - name: Upload Distributions
 #        uses: actions/upload-artifact@v2
@@ -262,8 +262,8 @@ jobs:
 
       - name: Sirius Run
         run: |
-          TEMP_DIR="$(cd "$(dirname "sirius_cli/build/test/temp_results")"; pwd -P)/$(basename "sirius_cli/build/test/temp_results")"
-          mkdir -p "${TEMP_DIR}" "${TEMP_DIR}/mgf_temp_output" "${TEMP_DIR}/mgf_temp_summary" "${TEMP_DIR}/ms_temp_output" "${TEMP_DIR}/ms_temp_summary" "${TEMP_DIR}/txt_temp_output" "${TEMP_DIR}/txt_temp_summary"
+          TEMP_DIR="$(cd "$(dirname "sirius_cli/src/test/temp_results")"; pwd -P)/$(basename "sirius_cli/src/test/temp_results")"
+          mkdir "${TEMP_DIR}" "${TEMP_DIR}/mgf_temp_output" "${TEMP_DIR}/mgf_temp_summary" "${TEMP_DIR}/ms_temp_output" "${TEMP_DIR}/ms_temp_summary" "${TEMP_DIR}/txt_temp_output" "${TEMP_DIR}/txt_temp_summary"
           DEMO_DIR="$(cd "$(dirname "sirius_doc/manual/demo-data")"; pwd -P)/$(basename "sirius_doc/manual/demo-data")"
           MGF_DATA="${DEMO_DIR}/mgf/laudanosine.mgf"
           MS_DATA="${DEMO_DIR}/ms/Bicuculline.ms"
@@ -289,7 +289,7 @@ jobs:
 
       - name: Sirius MGF Test
         run: |
-          RESULTS="sirius_cli/build/test/temp_results/"
+          RESULTS="sirius_cli/src/test/temp_results/"
           OUTPUT="${RESULTS}mgf_temp_output/1_laudanosine_FEATURE_1/"
           SUMMARY="${RESULTS}mgf_temp_summary/1_laudanosine_FEATURE_1/"
           CANOPUS="${OUTPUT}canopus/"
@@ -315,7 +315,7 @@ jobs:
 
       - name: Sirius MS Test
         run: |
-          RESULTS="sirius_cli/build/test/temp_results/"
+          RESULTS="sirius_cli/src/test/temp_results/"
           OUTPUT="${RESULTS}ms_temp_output/1_Bicuculline_Bicuculline/"
           SUMMARY="${RESULTS}ms_temp_summary/1_Bicuculline_Bicuculline/"
           CANOPUS="${OUTPUT}canopus/"
@@ -343,7 +343,7 @@ jobs:
 
       - name: Sirius TXT Test
         run: |
-          RESULTS="sirius_cli/build/test/temp_results/"
+          RESULTS="sirius_cli/src/test/temp_results/"
           SUMMARY="${RESULTS}txt_temp_summary/1_unknown_/"
           if [ -d "${SUMMARY}" ]; then
             echo "Found result directory ${SUMMARY}..."
@@ -361,7 +361,7 @@ jobs:
 
       - name: Sirius Run Cleanup
         run: |
-          rm -r sirius_cli/build/test/temp_results
+          rm -r sirius_cli/src/test/temp_results
 
       - name: Upload Distributions
         uses: actions/upload-artifact@v2