Lab tests update #6746
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Lab tests update | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths: | |
| - '.github/workflows/labtests.yml' | |
| - 'update_labtests.py' | |
| - 'update_stats.py' | |
| - 'transform/utils.py' | |
| - 'requirements.txt' | |
| pull_request: | |
| branches: [ master ] | |
| paths: | |
| - '.github/workflows/labtests.yml' | |
| - 'update_labtests.py' | |
| - 'update_stats.py' | |
| - 'transform/utils.py' | |
| - 'requirements.txt' | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: '10,15,20,40 7,8 * * *' # increased frequency for morning update | |
| #- cron: '35 */1 * * *' # periodic hourly update otherwise | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| update-data: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v3 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| cache: pip | |
| - name: Install python dependencies | |
| run: pip install -U -r requirements.txt | |
| - name: "Run lab tests update update_labtests.py" | |
| run: | | |
| python update_labtests.py | |
| # Runs a set of commands using the runners shell | |
| - name: Check git diff | |
| run: | | |
| ls -la csv/lab-tests.* | |
| ls -la csv/stats.* | |
| ls -la csv/cases.* | |
| ls -la csv/cases-opsi.* | |
| git status | |
| git diff | |
| # Git commit + push, see https://github.com/github-actions-x/commit | |
| - name: Publish NIJZ Lab tests update to git | |
| if: github.ref == 'refs/heads/master' | |
| uses: github-actions-x/[email protected] | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| push-branch: 'master' | |
| commit-message: 'NIJZ Lab tests data update 🤖' | |
| rebase: 'true' # pull and rebase before commit | |
| files: csv/lab-tests.* csv/stats.* csv/cases.* csv/cases-opsi.* | |
| name: Sledilnik data scrape bot 🤖 | |
| email: [email protected] |