Lab tests update #8229
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| name: Lab tests update | |
| # Controls when the action will run. Triggers the workflow on push or pull request | |
| # events but only for the master branch | |
| on: | |
| push: | |
| branches: [ master ] | |
| paths: | |
| - '.github/workflows/labtests.yml' | |
| - 'update_labtests.py' | |
| - 'update_stats.py' | |
| - 'transform/utils.py' | |
| - 'requirements.txt' | |
| pull_request: | |
| branches: [ master ] | |
| paths: | |
| - '.github/workflows/labtests.yml' | |
| - 'update_labtests.py' | |
| - 'update_stats.py' | |
| - 'transform/utils.py' | |
| - 'requirements.txt' | |
| schedule: | |
| # * is a special character in YAML so you have to quote this string | |
| - cron: '10,15,20,40 7,8 * * *' # increased frequency for morning update | |
| #- cron: '35 */1 * * *' # periodic hourly update otherwise | |
| workflow_dispatch: | |
| # A workflow run is made up of one or more jobs that can run sequentially or in parallel | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| update-data: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| timeout-minutes: 15 | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.11' | |
| cache: pip | |
| - name: Install python dependencies | |
| run: pip install -U -r requirements.txt | |
| - name: "Run lab tests update update_labtests.py" | |
| run: | | |
| python update_labtests.py | |
| # Runs a set of commands using the runners shell | |
| - name: Check git diff | |
| run: | | |
| ls -la csv/lab-tests.* | |
| ls -la csv/stats.* | |
| ls -la csv/cases.* | |
| ls -la csv/cases-opsi.* | |
| git status | |
| git diff | |
| # Git commit + push, see https://github.com/github-actions-x/commit | |
| - name: Publish NIJZ Lab tests update to git | |
| if: github.ref == 'refs/heads/master' | |
| uses: github-actions-x/[email protected] | |
| with: | |
| github-token: ${{ secrets.GITHUB_TOKEN }} | |
| push-branch: 'master' | |
| commit-message: 'NIJZ Lab tests data update 🤖' | |
| rebase: 'true' # pull and rebase before commit | |
| files: csv/lab-tests.* csv/stats.* csv/cases.* csv/cases-opsi.* | |
| name: Sledilnik data scrape bot 🤖 | |
| email: [email protected] |