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Lab tests update

Lab tests update #8229

Workflow file for this run

name: Lab tests update
# Controls when the action will run. Triggers the workflow on push or pull request
# events but only for the master branch
on:
push:
branches: [ master ]
paths:
- '.github/workflows/labtests.yml'
- 'update_labtests.py'
- 'update_stats.py'
- 'transform/utils.py'
- 'requirements.txt'
pull_request:
branches: [ master ]
paths:
- '.github/workflows/labtests.yml'
- 'update_labtests.py'
- 'update_stats.py'
- 'transform/utils.py'
- 'requirements.txt'
schedule:
# * is a special character in YAML so you have to quote this string
- cron: '10,15,20,40 7,8 * * *' # increased frequency for morning update
#- cron: '35 */1 * * *' # periodic hourly update otherwise
workflow_dispatch:
# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
# This workflow contains a single job called "build"
update-data:
# The type of runner that the job will run on
runs-on: ubuntu-latest
timeout-minutes: 15
# Steps represent a sequence of tasks that will be executed as part of the job
steps:
# Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
- uses: actions/checkout@v4
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.11'
cache: pip
- name: Install python dependencies
run: pip install -U -r requirements.txt
- name: "Run lab tests update update_labtests.py"
run: |
python update_labtests.py
# Runs a set of commands using the runners shell
- name: Check git diff
run: |
ls -la csv/lab-tests.*
ls -la csv/stats.*
ls -la csv/cases.*
ls -la csv/cases-opsi.*
git status
git diff
# Git commit + push, see https://github.com/github-actions-x/commit
- name: Publish NIJZ Lab tests update to git
if: github.ref == 'refs/heads/master'
uses: github-actions-x/[email protected]
with:
github-token: ${{ secrets.GITHUB_TOKEN }}
push-branch: 'master'
commit-message: 'NIJZ Lab tests data update 🤖'
rebase: 'true' # pull and rebase before commit
files: csv/lab-tests.* csv/stats.* csv/cases.* csv/cases-opsi.*
name: Sledilnik data scrape bot 🤖
email: [email protected]