DESCRIPTION

Package: seqR
Type: Package
Title: Fast and Comprehensive K-Mer Counting Package
Version: 1.0.1
Date: 2021-09-27
Authors@R: c(
    person(given = "Jadwiga",
           family = "Słowik",
           role = c("aut", "cre"),
           email = "jadwiga.slowik5@gmail.com",
           comment = c(ORCID = "0000-0003-3466-8933")),
    person(given = "Michał",
           family = "Burdukiewicz",
           role = c("ths"),
           email = "michalburdukiewicz@gmail.com", 
           comment = c(ORCID = "0000-0001-8926-582X"))
    )
Description: A fast implementation of k-mer (subsequences of length k) counting with the support for all types of biological sequences and k-mer variants.
License: GPL (>= 3)
Imports:
    Matrix,
    Rcpp (>= 1.0.4),
    RcppParallel (>= 5.1.2),
    rlang,
    slam
Depends:
    R(>= 3.6)
LinkingTo:
    Rcpp,
    RcppParallel
Suggests:
    covr,
    ggplot2,
    knitr,
    microbenchmark,
    pryr,
    rmarkdown,
    spelling,
    testthat
VignetteBuilder: 
    knitr
SystemRequirements:
    c++17,
    GNU make
NeedsCompilation: yes
RoxygenNote: 7.1.1
Encoding: UTF-8
Language: en-US
URL: https://github.com/slowikj/seqR
BugReports: https://github.com/slowikj/seqR/issues
LazyData: TRUE
Collate: 
    'CsgA.R'
    'RcppExports.R'
    'atomic_validators.R'
    'common.R'
    'seqR_result.R'
    'kmer_typed_functions.R'
    'kmer_functions_provider.R'
    'count_kmers.R'
    'count_multimers.R'
    'package.R'
    'zzz.R'