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pfGroupIndex++;
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MetaMorpheus/EngineLayer/DIA/DIAEngine.cs

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@@ -56,6 +56,7 @@ protected override MetaMorpheusEngineResults RunSpecific()
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pfGroup.PFgroupIndex = pfGroupIndex;
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var pseudoScan = PrecursorFragmentsGroup.GetPseudoMs2ScanFromPfGroup(pfGroup, DIAparams.PseudoMs2ConstructionType, CommonParameters, DataFile.FilePath);
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PseudoMs2Scans.Add(pseudoScan);
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pfGroupIndex++;
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}
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return new MetaMorpheusEngineResults(this);
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}

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