Merge pull request #11 from rmmiller22/master

Include Proteins with No peptides
smith-chem-wisc · Nov 17, 2020 · dd4188d · dd4188d
2 parents 58b67b5 + 97a1e5b
commit dd4188d
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Showing 4 changed files with 13 additions and 3 deletions.
diff --git a/Engine/GlobalVariables.cs b/Engine/GlobalVariables.cs
@@ -32,7 +32,7 @@ static GlobalVariables()
 #if DEBUG
                 ProteaseGuruVersion = "Not a release version. DEBUG.";
 #else
-                ProteaseGuruVersion = "0.0.14";
+                ProteaseGuruVersion = "0.0.15";
 #endif
             }
             else

diff --git a/Tasks/DigestionTask.cs b/Tasks/DigestionTask.cs
@@ -131,7 +131,7 @@ protected Dictionary<Protein, List<PeptideWithSetModifications>> DigestDatabase(
             Dictionary<Protein, List<PeptideWithSetModifications>> peptidesForProtein = new Dictionary<Protein, List<PeptideWithSetModifications>>(proteinsFromDatabase.Count);
             foreach (var protein in proteinsFromDatabase)
             {
-                List<PeptideWithSetModifications> peptides = protein.Digest(dp, new List<Modification> { }, new List<Modification> { }).ToList();
+                List<PeptideWithSetModifications> peptides = protein.Digest(dp, new List<Modification> { }, new List<Modification> { }).ToList();                
                 peptidesForProtein.Add(protein, peptides);
             }
             return peptidesForProtein;
@@ -228,6 +228,10 @@ Dictionary<Protein, List<InSilicoPep>> DeterminePeptideStatus(string databaseNam
                     }
                 }
             }
+            foreach (var protein in databasePeptides.Keys.Where(p => inSilicoPeptides.ContainsKey(p) == false))
+            {
+                inSilicoPeptides.Add(protein, new List<InSilicoPep>());
+            }
             databasePeptides = null;
             return inSilicoPeptides;
         }

diff --git a/Tasks/MyTaskResults.cs b/Tasks/MyTaskResults.cs
@@ -118,7 +118,7 @@ private List<string> writeSummary(Dictionary<string, Dictionary<string, Dictiona
                     {
                         string prot = protease.Key;
                        summary.Add("    "+prot + " Results:");
-                        var allPeptides = protease.Value.SelectMany(p => p.Value);
+                        var allPeptides = protease.Value.SelectMany(p => p.Value);                        
                         if (parameters.TreatModifiedPeptidesAsDifferent)
                         {
                             summary.Add("       Number of Peptides: " + allPeptides.Count());

diff --git a/global.json b/global.json
@@ -0,0 +1,6 @@
+{
+  "sdk": {
+    "version": "3.1.102",
+    "rollForward": "latestFeature"
+  }
+}