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@RayMSMS RayMSMS commented Sep 3, 2025

Fixed a bug in fragmentation handling where cases with more than two modifications were not considered. Now, if a fragment contains two or more modifications, the algorithm generates products with a single loss for each modification as well as combined losses for multiple modifications.

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codecov bot commented Sep 3, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 80.95%. Comparing base (7390b52) to head (8c396ab).

Additional details and impacted files

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@@            Coverage Diff             @@
##           master     #951      +/-   ##
==========================================
+ Coverage   80.94%   80.95%   +0.01%     
==========================================
  Files         265      265              
  Lines       38334    38365      +31     
  Branches     4139     4143       +4     
==========================================
+ Hits        31029    31060      +31     
  Misses       6607     6607              
  Partials      698      698              
Files with missing lines Coverage Δ
...roteolyticDigestion/PeptideWithSetModifications.cs 96.05% <100.00%> (+0.13%) ⬆️
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