Option for better mapping of very short reads #59

	name: Abismal builds on Ubuntu

	on:
	workflow_dispatch:
	push:
	branches: [ "master" ]
	pull_request:
	branches: [ "master" ]

	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v4
	with:
	submodules: recursive
	- name: Update apt
	run: sudo apt update
	- name: Install dependencies
	run: sudo apt-get install -y libhts-dev
	- name: Generate configure script
	run: ./autogen.sh
	- name: configure for GCC
	run: ./configure CXX="g++"
	- name: make with g++
	run: make
	- name: cleanup after GCC
	run: make distclean
	- name: install Clang dependencies
	run: sudo apt-get install -y libomp-dev
	- name: configure for Clang
	run: ./configure CXX="clang++"
	- name: make with clang++
	run: make
	- name: cleanup after clang++
	run: make clean

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