Adding the cstdint header because some compilers seem to need it for …

…things like uint32_t etc

src/analysis/hmr-rep.cpp

@@ -19,6 +19,7 @@
 #include <iomanip>
 #include <string>
 #include <stdexcept>
+#include <cstdint> // for [u]int[0-9]+_t
 
 #include "smithlab_utils.hpp"
 #include "smithlab_os.hpp"

src/analysis/hmr.cpp

@@ -21,6 +21,7 @@
 #include <string>
 #include <stdexcept>
 #include <unordered_set>
+#include <cstdint> // for [u]int[0-9]+_t
 
 #include "smithlab_utils.hpp"
 #include "smithlab_os.hpp"

src/analysis/methcounts.cpp

@@ -24,6 +24,7 @@
 #include <sstream>
 #include <stdexcept>
 #include <unordered_set>
+#include <cstdint> // for [u]int[0-9]+_t
 
 #include "OptionParser.hpp"
 // #include "GenomicRegion.hpp"

src/common/dnmt_error.hpp

@@ -19,6 +19,7 @@
 #include <stdexcept>
 #include <string>
 #include <cstring>
+#include <cstdint> // for int64_t
 
 struct dnmt_error: public std::exception {
   int64_t err;        // error possibly from HTSlib

src/utils/fast-liftover.cpp

@@ -32,6 +32,7 @@
 #include <unordered_map>
 #include <stdexcept>
 #include <algorithm>
+#include <cstdint> // for [u]int[0-9]+_t
 
 #include "smithlab_utils.hpp"
 #include "smithlab_os.hpp"

src/utils/format-reads.cpp

@@ -35,6 +35,7 @@
 #include <stdexcept>
 #include <sstream>
 #include <cstring>
+#include <cstdint> // for [u]int[0-9]+_t
 
 #include <config.h>
 

src/utils/uniq.cpp

@@ -22,6 +22,7 @@
 #include <vector>
 #include <iostream>
 #include <stdexcept>
+#include <cstdint> // for [u]int[0-9]+_t
 
 // generated by autotools
 #include <config.h>