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v141 prep #161

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Oct 7, 2023
Merged

v141 prep #161

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d476dba
preparing for v1.4.1
andrewdavidsmith Oct 6, 2023
189804a
md5sum: updating ahead of v1.4.1
andrewdavidsmith Oct 6, 2023
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2 changes: 1 addition & 1 deletion MAINTAINERS.md
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Original file line number Diff line number Diff line change
Expand Up @@ -67,6 +67,6 @@ The image can be pulled by one of the following commands.
```bash
docker pull ghcr.io/smithlabcode/dnmtools:latest
docker pull ghcr.io/smithlabcode/dnmtools:[7-DIGIT SHA]
docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.0)
docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.1)
```

10 changes: 5 additions & 5 deletions README.md
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Expand Up @@ -12,7 +12,7 @@ sequencing (RRBS). These tools focus on overcoming the computing
challenges imposed by the scale of genome-wide DNA methylation data,
which is usually the early parts of data analysis.

## Installing release 1.4.0
## Installing release 1.4.1

The documentation for DNMTools can be found
[here](https://dnmtools.readthedocs.io). But if you want to install
Expand Down Expand Up @@ -41,14 +41,14 @@ repo, it is easiest if all dependencies are available through conda.

### Configuration

* Download [dnmtools-1.4.0.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.0/dnmtools-1.4.0.tar.gz).
* Download [dnmtools-1.4.1.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.1/dnmtools-1.4.1.tar.gz).
* Unpack the archive:
```console
tar -zxvf dnmtools-1.4.0.tar.gz
tar -zxvf dnmtools-1.4.1.tar.gz
```
* Move into the dnmtools directory and create a build directory:
```console
cd dnmtools-1.4.0 && mkdir build && cd build
cd dnmtools-1.4.1 && mkdir build && cd build
```
* Run the configuration script:
```console
Expand Down Expand Up @@ -137,7 +137,7 @@ docker tag ghcr.io/smithlabcode/dnmtools:latest dnmtools:latest

You can also install the image for a particular vertion by running
```console
docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.0)
docker pull ghcr.io/smithlabcode/dnmtools:v[VERSION NUMBER] #(e.g. v1.4.1)
```
Not all versions have corresponding images; you can find available images
[here](https://github.com/smithlabcode/dnmtools/pkgs/container/dnmtools).
Expand Down
2 changes: 1 addition & 1 deletion configure.ac
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Expand Up @@ -14,7 +14,7 @@ dnl but WITHOUT ANY WARRANTY; without even the implied warranty of
dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
dnl General Public License for more details.

AC_INIT([dnmtools], [1.4.0], [[email protected]],
AC_INIT([dnmtools], [1.4.1], [[email protected]],
[dnmtools], [https://github.com/smithlabcode/dnmtools])
dnl the config.h is #included in the sources for version info
AC_CONFIG_HEADERS([config.h])
Expand Down
4 changes: 2 additions & 2 deletions data/md5sum.txt
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Expand Up @@ -18,5 +18,5 @@ e7e9590475a7f9b1ae41701d81892e57 tests/two_epialleles.amr
ec6a686617cad31e9f7a37a3d378e6ed tests/two_epialleles.states
93e38b20d162062a5d147c4290095a13 tests/mlml.out
d947fe3d61ef7b1564558a69608f0e64 tests/methylome.pmd
04c007d96bcaf975bdb09afc46216f72 tests/reads.fmt.sam
03057e8c736ff1f07f7fb6e7f20d0cf3 tests/reads.fmt.srt.uniq.sam
3f4241b03027961ae4753644dbd2a2b4 tests/reads.fmt.sam
0089ea4ef0e36f91c48275630599e79b tests/reads.fmt.srt.uniq.sam
6 changes: 3 additions & 3 deletions docs/content/quickstart.md
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Expand Up @@ -72,14 +72,14 @@ would need to be activated when you want to use dnmtools.

### Configuration

* Download [dnmtools-1.4.0.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.0/dnmtools-1.4.0.tar.gz).
* Download [dnmtools-1.4.1.tar.gz](https://github.com/smithlabcode/dnmtools/releases/download/v1.4.1/dnmtools-1.4.1.tar.gz).
* Unpack the archive:
```console
$ tar -zxvf dnmtools-1.4.0.tar.gz
$ tar -zxvf dnmtools-1.4.1.tar.gz
```
* Move into the dnmtools directory and create a build directory:
```console
$ cd dnmtools-1.4.0
$ cd dnmtools-1.4.1
$ mkdir build && cd build
```
* Run the configuration script:
Expand Down