Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

One-based variable-step bigWig in kmersites #238

Merged
merged 1 commit into from
Jun 30, 2024

Conversation

andrewdavidsmith
Copy link
Collaborator

Since kmersites is intended to create tracks for the ucsc genome browser, the offset argument should default to 1 since we usually want to change the 0-based chromosomal positions to 1-based for the standard in wigToBigWig.

…se the input data will be 0-based and dynamic step wig is assumed to be 1-based for the ucsc tools, particularly wigToBigWig
@andrewdavidsmith andrewdavidsmith merged commit 8e82292 into master Jun 30, 2024
1 check passed
@andrewdavidsmith andrewdavidsmith deleted the kmersites-variable-step-wig-offset-fix branch June 30, 2024 23:15
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

1 participant