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Adding a test script, hashes and an archive of test data
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#!/usr/bin/env bash | ||
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tar -zxf test_build/test_data.tgz -C test_build | ||
infiles=$(ls --color=no test_build/*.fastq) | ||
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fail=0 | ||
for i in ${infiles} | ||
do | ||
a=$(basename $i ".fastq") | ||
mkdir -p test_output/${a} | ||
./falco -o test_output/${a} ${i} \ | ||
1>test_output/${a}/${a}.output \ | ||
2>test_output/${a}/${a}.error | ||
for j in test_output/${a}/*.txt; do | ||
x=$(md5sum -c test_build/md5sum.txt --ignore-missing | grep "${j}:" | cut -d ' ' -f 2); | ||
if [[ "${x}" != "OK" ]]; then | ||
echo "${a} failed on ${j}" | ||
fail=1 | ||
fi | ||
done | ||
rm -rf test_output/${a} | ||
done | ||
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rmdir test_output | ||
rm ${infiles} | ||
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exit ${fail} |
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fc4ef1feb58f7c1eb9eaddb7c6d521de test_output/SRR1853178_1/fastqc_data.txt | ||
36df1dcab539ba4ef885239fc8524636 test_output/SRR1853178_1/summary.txt | ||
cfac7dfa64bd12d081725df564bb4c6a test_output/SRR3897196_2/fastqc_data.txt | ||
80cd130958bcb2219f1e5a07d06a3b6e test_output/SRR3897196_2/summary.txt | ||
b6c3378b6c065c99561ffd9ede8e173e test_output/SRR9624732_1/fastqc_data.txt | ||
a525d455b17eb6ba84cd2a60d281a2b0 test_output/SRR9624732_1/summary.txt | ||
94636e299fefe48c3e29c93b11535743 test_output/SRR10143153_2/fastqc_data.txt | ||
19f1811f324e4c44154f659bb6e22806 test_output/SRR10143153_2/summary.txt | ||
cb9e1193be45d3622d8941ec9fa2dce0 test_output/SRR1772703.lite.1/fastqc_data.txt | ||
ad5727295e7c8de6eb6874837bf1518f test_output/SRR1772703.lite.1/summary.txt | ||
d5583c7ac1efd55c92f518e802487e2a test_output/SRR9624732_2/fastqc_data.txt | ||
fefc5d746f853c14b5e00421ad1ec260 test_output/SRR9624732_2/summary.txt | ||
a68b314777e30c5153eeb9df74e21d25 test_output/SRR10124060/fastqc_data.txt | ||
776f7d1b53bbed8683de9ca1d2529f1e test_output/SRR10124060/summary.txt | ||
928d13844709c9ad3628fde11714ce52 test_output/SRR891268_2/fastqc_data.txt | ||
20a8e50baace4c672622793874a3d7de test_output/SRR891268_2/summary.txt | ||
0ea4e339daac00903a3b7e23db7c409b test_output/SRR9878537.lite.1/fastqc_data.txt | ||
e5c40997d4993c07e164ee5598c39cf9 test_output/SRR9878537.lite.1/summary.txt | ||
d687d25f933aa371d585985f36ff8a94 test_output/SRR891268_1/fastqc_data.txt | ||
69e7d0c53cd2e67117637c408b65333a test_output/SRR891268_1/summary.txt | ||
57cb46f8865df05be72ab94b2c4e5628 test_output/SRR6059706.lite.1/fastqc_data.txt | ||
e348e4bcc7fc6f05e989ac7858d2b287 test_output/SRR6059706.lite.1/summary.txt | ||
d8b88639e5161b0b3dd550c71541779b test_output/SRR6387347/fastqc_data.txt | ||
1699c5a55895dbeec69c1758b5d58379 test_output/SRR6387347/summary.txt | ||
6ffc47446bfac6e1a91a9b850107d790 test_output/SRR3897196_1/fastqc_data.txt | ||
b736ee95d5c450ef5c0dda31957b6818 test_output/SRR3897196_1/summary.txt | ||
4d883b0b2c2c500b03c4ebe9a276d9b7 test_output/SRR10143153_1/fastqc_data.txt | ||
9ad191925d47a57d4f8b12f21ba0a7c3 test_output/SRR10143153_1/summary.txt | ||
213edfe0e16a6f3312af4dcbc75a2797 test_output/SRR1853178_2/fastqc_data.txt | ||
32070625a8fde1b986d05068494c6cd5 test_output/SRR1853178_2/summary.txt |
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