Adding a test script, hashes and an archive of test data

test/falco.test

@@ -0,0 +1,27 @@
+#!/usr/bin/env bash
+
+tar -zxf test_build/test_data.tgz -C test_build
+infiles=$(ls --color=no test_build/*.fastq)
+
+fail=0
+for i in ${infiles}
+do
+  a=$(basename $i ".fastq")
+  mkdir -p test_output/${a}
+  ./falco -o test_output/${a} ${i} \
+       1>test_output/${a}/${a}.output  \
+       2>test_output/${a}/${a}.error
+  for j in test_output/${a}/*.txt; do
+      x=$(md5sum -c test_build/md5sum.txt --ignore-missing | grep "${j}:" | cut -d ' ' -f 2);
+      if [[ "${x}" != "OK" ]]; then
+          echo "${a} failed on ${j}"
+          fail=1
+      fi
+  done
+  rm -rf test_output/${a}
+done
+
+rmdir test_output
+rm ${infiles}
+
+exit ${fail}

test/md5sum.txt

@@ -0,0 +1,30 @@
+fc4ef1feb58f7c1eb9eaddb7c6d521de  test_output/SRR1853178_1/fastqc_data.txt
+36df1dcab539ba4ef885239fc8524636  test_output/SRR1853178_1/summary.txt
+cfac7dfa64bd12d081725df564bb4c6a  test_output/SRR3897196_2/fastqc_data.txt
+80cd130958bcb2219f1e5a07d06a3b6e  test_output/SRR3897196_2/summary.txt
+b6c3378b6c065c99561ffd9ede8e173e  test_output/SRR9624732_1/fastqc_data.txt
+a525d455b17eb6ba84cd2a60d281a2b0  test_output/SRR9624732_1/summary.txt
+94636e299fefe48c3e29c93b11535743  test_output/SRR10143153_2/fastqc_data.txt
+19f1811f324e4c44154f659bb6e22806  test_output/SRR10143153_2/summary.txt
+cb9e1193be45d3622d8941ec9fa2dce0  test_output/SRR1772703.lite.1/fastqc_data.txt
+ad5727295e7c8de6eb6874837bf1518f  test_output/SRR1772703.lite.1/summary.txt
+d5583c7ac1efd55c92f518e802487e2a  test_output/SRR9624732_2/fastqc_data.txt
+fefc5d746f853c14b5e00421ad1ec260  test_output/SRR9624732_2/summary.txt
+a68b314777e30c5153eeb9df74e21d25  test_output/SRR10124060/fastqc_data.txt
+776f7d1b53bbed8683de9ca1d2529f1e  test_output/SRR10124060/summary.txt
+928d13844709c9ad3628fde11714ce52  test_output/SRR891268_2/fastqc_data.txt
+20a8e50baace4c672622793874a3d7de  test_output/SRR891268_2/summary.txt
+0ea4e339daac00903a3b7e23db7c409b  test_output/SRR9878537.lite.1/fastqc_data.txt
+e5c40997d4993c07e164ee5598c39cf9  test_output/SRR9878537.lite.1/summary.txt
+d687d25f933aa371d585985f36ff8a94  test_output/SRR891268_1/fastqc_data.txt
+69e7d0c53cd2e67117637c408b65333a  test_output/SRR891268_1/summary.txt
+57cb46f8865df05be72ab94b2c4e5628  test_output/SRR6059706.lite.1/fastqc_data.txt
+e348e4bcc7fc6f05e989ac7858d2b287  test_output/SRR6059706.lite.1/summary.txt
+d8b88639e5161b0b3dd550c71541779b  test_output/SRR6387347/fastqc_data.txt
+1699c5a55895dbeec69c1758b5d58379  test_output/SRR6387347/summary.txt
+6ffc47446bfac6e1a91a9b850107d790  test_output/SRR3897196_1/fastqc_data.txt
+b736ee95d5c450ef5c0dda31957b6818  test_output/SRR3897196_1/summary.txt
+4d883b0b2c2c500b03c4ebe9a276d9b7  test_output/SRR10143153_1/fastqc_data.txt
+9ad191925d47a57d4f8b12f21ba0a7c3  test_output/SRR10143153_1/summary.txt
+213edfe0e16a6f3312af4dcbc75a2797  test_output/SRR1853178_2/fastqc_data.txt
+32070625a8fde1b986d05068494c6cd5  test_output/SRR1853178_2/summary.txt