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Bam t #53

Merged
merged 17 commits into from
Aug 18, 2023
Merged

Bam t #53

merged 17 commits into from
Aug 18, 2023

Commits on Aug 11, 2023

  1. added a line to get seq len

    @masarunakajima
    masarunakajima committed Aug 11, 2023
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  2. fixed bug

    @masarunakajima
    masarunakajima committed Aug 11, 2023
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Commits on Aug 15, 2023

  1. Changed read_entry for bamreader. Needs testing.

    @masarunakajima
    masarunakajima committed Aug 15, 2023
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  2. Merge branch 'master' into bam_t

    @masarunakajima
    masarunakajima committed Aug 15, 2023
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Commits on Aug 16, 2023

  1. fixed some bugs

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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  2. Running without error, but summary staticsitcs are different.

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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  3. running but not quite the same result

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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  4. replaced with explicit 33

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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  5. modified with -2 to match the output

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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  6. adding sample bam file

    @masarunakajima
    masarunakajima committed Aug 16, 2023
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Commits on Aug 17, 2023

  1. remove -2 and confirmed the summary satistics are identical between s… 

    …am and bam
    @masarunakajima
    masarunakajima committed Aug 17, 2023
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  2. added sample sam file

    @masarunakajima
    masarunakajima committed Aug 17, 2023
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  3. moved BamReader functions into where they belong

    @masarunakajima
    masarunakajima committed Aug 17, 2023
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  4. added condition for bam file in get_tile_split_position

    @masarunakajima
    masarunakajima committed Aug 17, 2023
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Commits on Aug 18, 2023

  1. Added function to adjust the size of tile_position_{quality,count} so… 

    … that the vectors all have max read length even when quality scores are skipped in bam and sam due to lack of quality scores
    @masarunakajima
    masarunakajima committed Aug 18, 2023
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  2. made sam and bam conditional for get_tile_split_position

    @masarunakajima
    masarunakajima committed Aug 18, 2023
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  3. Made a separate case for sam file in get_tile_split_position

    @masarunakajima
    masarunakajima committed Aug 18, 2023
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