Remove progress bar for BAM input #62
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…ence within a BAM record (bam1_t) and to reverse the quality scores in a record.
…on as a BAM record (bam1_t) is read, if it is marked as reversed with the bam_is_rev function declared in sam.h, the sequence is reverse complemented, the quality scores are reversed, and the record itself is marked as not reversed.
…left in and fixing code formatting
…se we can't monitor progress currently in that format
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The reason to do this is that we do not have the ability to easily monitor progress within a BAM file while reading from it. The solution is just to check the template parameter and force quiet mode if it's a BamReader