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v0.3.0 - 9/9/2021

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@guilhermesena1 guilhermesena1 released this 09 Sep 23:18
· 151 commits to master since this release

The correct files to download are either falco-0.3.0.zip or falco-0.3.0.tar.gz
Please do not download the "Source code" files automatically generated by github, as they do not contain all files necessary for compilation

This release adds new functionality to falco and addresses several bugs reported in the issues section, listed below

#14 : When using the --nano flag, the basic statistics file will display "Oxford Nanopore" instead of Illumina. Analysis is still done for Illumina sequences. We need a fast5 parser in C++ (or write one from scratch) to allow fast5 support, which is not yet available

#15 : The k-mer content module was implemented, but is still missing p-value calculations. For now it approximates FastQC behavior, and in the next release it will be identical. We also show 10 k-mers instead of 6 in FastQC since we can erase some of them through plotly to not make the plot so dense

#16 : Fixed a bug where, if the adapters file was not provided (which is the case in the Conda release), adapters were not being counted.

#17 : Fixed several bugs in the overrepresented sequence "hits" comparison with the contaminant list, including allowing partial overlap between sequence and contaminant.