Changes protein hashing #189

	name: Continuous Integration

	on:
	pull_request:
	branches: [main]

	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true

	jobs:
	build:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	python-version: ["3.12"]
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
	steps:
	- name: Checkout
	uses: actions/checkout@v4
	- name: Set up Python
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	- name: Install sg
	run: python3 -m pip install -e .[ci]
	- name: Install hmmer
	run: sudo apt-get install hmmer
	- name: Run tests
	run: pytest tests -v --cov=./socialgene --cov-report=xml:./coverage.xml --cov-report term-missing
	- uses: codecov/codecov-action@v3
	with:
	fail_ci_if_error: true # optional (default = false)
	files: ./coverage.xml
	verbose: true # optional (default = false)
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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