block the naughty mmseqs2 --add-orf-stop param

soedinglab · Apr 19, 2024 · 66430bf · 66430bf
1 parent 6bd769f
commit 66430bf
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/commons/LocalParameters.h b/src/commons/LocalParameters.h
@@ -103,6 +103,7 @@ class LocalParameters : public Parameters {
         predictexonsworkflow = combineList(searchworkflow, collectoptimalset);
         predictexonsworkflow.push_back(&PARAM_REVERSE_FRAGMENTS);
         predictexonsworkflow = removeParameter(predictexonsworkflow, PARAM_NUM_ITERATIONS);
+        predictexonsworkflow = removeParameter(predictexonsworkflow, PARAM_ADD_ORF_STOP);
 
         reduceredundancy.push_back(&PARAM_ALLOW_OVERLAP);
         reduceredundancy.push_back(&PARAM_THREADS);