fixing esmfold/openfold to use -std=c++17 (needed for cuda12 and pyto… #683
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name: Test | |
on: | |
push: | |
branches: | |
- main | |
pull_request: | |
branches: | |
- main | |
jobs: | |
run-tests: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
# 3.9 has some strange failure | |
python-version: [ '3.8', '3.10' ] | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install poetry | |
run: | | |
curl -sSL https://install.python-poetry.org | python3 - --version 1.2.2 | |
$HOME/.local/bin/poetry config virtualenvs.in-project true | |
- uses: actions/cache@v3 | |
with: | |
path: .venv | |
key: poetry-${{ runner.os }}-${{ matrix.python-version }}-${{ hashFiles('poetry.lock') }} | |
#restore-keys: | | |
# poetry-${{ runner.os }}-${{ matrix.python-version }}- | |
- name: Install depencies | |
run: $HOME/.local/bin/poetry install -E alphafold | |
- name: Run tests | |
run: .venv/bin/pytest | |
- name: Run CLI | |
run: | | |
.venv/bin/colabfold_batch --help | |
.venv/bin/colabfold_search --help | |
.venv/bin/colabfold_split_msas --help | |