Skip to content
@sorgerlab

Sorger Lab @ Harvard Medical School

Pinned Loading

  1. indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly…

    Python 184 69

  2. rasmodel Public

    RAS Executable Model (REM)

    Python 4 9

  3. CancerBrowser Public

    HMS LINCS Cancer Browser

    JavaScript 5 3

Repositories

Showing 10 of 55 repositories
  • indra Public

    INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated model assembly system interfacing with NLP systems and databases to collect knowledge, and through a process of assembly, produce causal graphs and dynamical models.

    Python 184 BSD-2-Clause 69 33 7 Updated Feb 27, 2025
  • pathwaymap.indra.bio Public

    pathwaymap.indra.bio website

    JavaScript 2 BSD-2-Clause 1 0 7 Updated Jan 8, 2025
  • indra_pathway_map Public Forked from pvtodorov/indra_pathway_map
    JavaScript 0 BSD-2-Clause 5 0 0 Updated Jan 7, 2025
  • famplex Public Forked from johnbachman/famplex

    Resources for grounding protein families and complexes from text and describing their hierarchical relationships.

    Python 18 CC0-1.0 31 28 2 Updated Jul 10, 2024
  • bioagents Public

    Biological reasoning agents

    Python 5 BSD-2-Clause 15 7 2 Updated Apr 3, 2024
  • OMERO.forms Public

    Extension to OMERO.web to enhance metadata input and provide provenance

    Python 7 AGPL-3.0 4 4 3 Updated Dec 5, 2023
  • indra_assembly_paper Public

    Automated assembly of molecular mechanisms at scale from text mining and curated databases

    Jupyter Notebook 0 1 0 1 Updated Jan 23, 2023
  • indra_apps Public
    Jupyter Notebook 1 8 0 0 Updated Apr 26, 2021
  • earm Public Forked from clopezx/earm

    Extrinsic Apoptosis Reaction Model

    Python 1 17 3 1 Updated Oct 28, 2020
  • cycif Public

    Processing and analysys for Cyclic Immunofluorescence (CycIF) microscopy images

    MATLAB 9 MIT 4 0 0 Updated May 5, 2019
View all repositories