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commenting out napari gui and moving to the end of script
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shachafl committed May 21, 2024
1 parent 6185e87 commit d72f8a3
Showing 1 changed file with 1 addition and 4 deletions.
5 changes: 1 addition & 4 deletions notebooks/py/smFISH.py
Original file line number Diff line number Diff line change
Expand Up @@ -32,10 +32,6 @@
import starfish.data
from starfish import FieldOfView, DecodedIntensityTable
from starfish.types import TraceBuildingStrategies

# equivalent to %gui qt
ipython = get_ipython()
ipython.magic("gui qt5")
# EPY: END code

# EPY: START markdown
Expand Down Expand Up @@ -171,5 +167,6 @@ def processing_pipeline(
image, intensities = processing_pipeline(experiment, fov_name='fov_001')

# uncomment the below line to visualize the output with the spot calls.
# %gui qt
# viewer = starfish.display(image, intensities)
# EPY: END code

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