Deploying to gh-pages from @ a812889 🚀

spatial-model-editor · Jun 2, 2023 · 16085c7 · 16085c7
commit 16085c7
Show file tree

Hide file tree

Showing 84 changed files with 322 additions and 0 deletions.
diff --git a/4753c5ba57962b4d7bf8.woff b/4753c5ba57962b4d7bf8.woff
diff --git a/6d63d0501e5ed7b79dab.woff2 b/6d63d0501e5ed7b79dab.woff2
diff --git a/assets/BMBF_logo_en.jpeg b/assets/BMBF_logo_en.jpeg
diff --git a/assets/dune/dune-copasi.svg b/assets/dune/dune-copasi.svg
diff --git a/assets/dune/dune_options.png b/assets/dune/dune_options.png
diff --git a/assets/dune/dune_options.webp b/assets/dune/dune_options.webp
diff --git a/assets/gray-scott.mp4 b/assets/gray-scott.mp4
diff --git a/assets/libsbml.svg b/assets/libsbml.svg
diff --git a/assets/mesh/mesh_original_image.png b/assets/mesh/mesh_original_image.png
diff --git a/assets/mesh/mesh_original_image.webp b/assets/mesh/mesh_original_image.webp
diff --git a/assets/mesh/mesh_pixel_contours.png b/assets/mesh/mesh_pixel_contours.png
diff --git a/assets/mesh/mesh_pixel_contours.webp b/assets/mesh/mesh_pixel_contours.webp
diff --git a/assets/mesh/mesh_simplify_lines.png b/assets/mesh/mesh_simplify_lines.png
diff --git a/assets/mesh/mesh_simplify_lines.webp b/assets/mesh/mesh_simplify_lines.webp
diff --git a/assets/mesh/mesh_split_edge_contours.png b/assets/mesh/mesh_split_edge_contours.png
diff --git a/assets/mesh/mesh_split_edge_contours.webp b/assets/mesh/mesh_split_edge_contours.webp
diff --git a/assets/mesh/mesh_triangulate_0.png b/assets/mesh/mesh_triangulate_0.png
diff --git a/assets/mesh/mesh_triangulate_0.webp b/assets/mesh/mesh_triangulate_0.webp
diff --git a/assets/mesh/mesh_triangulate_1.png b/assets/mesh/mesh_triangulate_1.png
diff --git a/assets/mesh/mesh_triangulate_1.webp b/assets/mesh/mesh_triangulate_1.webp
diff --git a/assets/mesh/mesh_triangulate_2.png b/assets/mesh/mesh_triangulate_2.png
diff --git a/assets/mesh/mesh_triangulate_2.webp b/assets/mesh/mesh_triangulate_2.webp
diff --git a/assets/mesh/mesh_triangulate_3.png b/assets/mesh/mesh_triangulate_3.png
diff --git a/assets/mesh/mesh_triangulate_3.webp b/assets/mesh/mesh_triangulate_3.webp
diff --git a/assets/ode/ode1.png b/assets/ode/ode1.png
diff --git a/assets/ode/ode1.webp b/assets/ode/ode1.webp
diff --git a/assets/ode/ode2.png b/assets/ode/ode2.png
diff --git a/assets/ode/ode2.webp b/assets/ode/ode2.webp
diff --git a/assets/ode/ode3.png b/assets/ode/ode3.png
diff --git a/assets/ode/ode3.webp b/assets/ode/ode3.webp
diff --git a/assets/opt/opt.png b/assets/opt/opt.png
diff --git a/assets/opt/opt.webp b/assets/opt/opt.webp
diff --git a/assets/opt/opt_param.png b/assets/opt/opt_param.png
diff --git a/assets/opt/opt_param.webp b/assets/opt/opt_param.webp
diff --git a/assets/opt/opt_setup.png b/assets/opt/opt_setup.png
diff --git a/assets/opt/opt_setup.webp b/assets/opt/opt_setup.webp
diff --git a/assets/opt/opt_target.png b/assets/opt/opt_target.png
diff --git a/assets/opt/opt_target.webp b/assets/opt/opt_target.webp
diff --git a/assets/opt/opt_target_concentration.png b/assets/opt/opt_target_concentration.png
diff --git a/assets/opt/opt_target_concentration.webp b/assets/opt/opt_target_concentration.webp
diff --git a/assets/pixel/convergence.png b/assets/pixel/convergence.png
diff --git a/assets/pixel/convergence.webp b/assets/pixel/convergence.webp
diff --git a/assets/pixel/embedded.png b/assets/pixel/embedded.png
diff --git a/assets/pixel/embedded.webp b/assets/pixel/embedded.webp
diff --git a/assets/pixel/pixel_options.png b/assets/pixel/pixel_options.png
diff --git a/assets/pixel/pixel_options.webp b/assets/pixel/pixel_options.webp
diff --git a/assets/pixel/runtime.png b/assets/pixel/runtime.png
diff --git a/assets/pixel/runtime.webp b/assets/pixel/runtime.webp
diff --git a/assets/screenshots/geometry0.png b/assets/screenshots/geometry0.png
diff --git a/assets/screenshots/geometry0.webp b/assets/screenshots/geometry0.webp
diff --git a/assets/screenshots/geometry1.png b/assets/screenshots/geometry1.png
diff --git a/assets/screenshots/geometry1.webp b/assets/screenshots/geometry1.webp
diff --git a/assets/screenshots/geometry2.png b/assets/screenshots/geometry2.png
diff --git a/assets/screenshots/geometry2.webp b/assets/screenshots/geometry2.webp
diff --git a/assets/screenshots/reactions.png b/assets/screenshots/reactions.png
diff --git a/assets/screenshots/reactions.webp b/assets/screenshots/reactions.webp
diff --git a/assets/screenshots/simulation.png b/assets/screenshots/simulation.png
diff --git a/assets/screenshots/simulation.webp b/assets/screenshots/simulation.webp
diff --git a/assets/screenshots/species0.png b/assets/screenshots/species0.png
diff --git a/assets/screenshots/species0.webp b/assets/screenshots/species0.webp
diff --git a/assets/screenshots/species1.png b/assets/screenshots/species1.png
diff --git a/assets/screenshots/species1.webp b/assets/screenshots/species1.webp
diff --git a/assets/screenshots/species2.png b/assets/screenshots/species2.png
diff --git a/assets/screenshots/species2.webp b/assets/screenshots/species2.webp
diff --git a/assets/sme-contrib/sme-contrib1.png b/assets/sme-contrib/sme-contrib1.png
diff --git a/assets/sme-contrib/sme-contrib1.webp b/assets/sme-contrib/sme-contrib1.webp
diff --git a/assets/sme-contrib/sme-contrib2.png b/assets/sme-contrib/sme-contrib2.png
diff --git a/assets/sme-contrib/sme-contrib2.webp b/assets/sme-contrib/sme-contrib2.webp
diff --git a/assets/sme.svg b/assets/sme.svg
diff --git a/assets/sme/sme1.png b/assets/sme/sme1.png
diff --git a/assets/sme/sme1.webp b/assets/sme/sme1.webp
diff --git a/assets/sme/sme2.png b/assets/sme/sme2.png
diff --git a/assets/sme/sme2.webp b/assets/sme/sme2.webp
diff --git a/assets/sme/sme3.png b/assets/sme/sme3.png
diff --git a/assets/sme/sme3.webp b/assets/sme/sme3.webp
diff --git a/assets/sme/sme4.png b/assets/sme/sme4.png
diff --git a/assets/sme/sme4.webp b/assets/sme/sme4.webp
diff --git a/examples.html b/examples.html
@@ -0,0 +1,4 @@
+<!DOCTYPE html><html lang="en"><head><meta charset="utf-8"><meta name="viewport" content="width=device-width,initial-scale=1,shrink-to-fit=no"><meta name="description" content="Spatial Model Editor is a user friendly GUI editor to create and edit two-dimensional spatial SBML models of bio-chemical reactions and simulate them using the dune-copasi solver for reaction-diffusion systems."><meta name="author" content="Liam Keegan"><meta name="google-site-verification" content="j9-pKiY0YNWFAS0d9qsHQr8aFUtvYHVxAYrZenKMcmI"><title>Spatial Model Editor - Examples</title><link rel="icon" type="image/svg+xml" href="assets/sme.svg"><link href="main.css" rel="stylesheet"></head><body><nav class="navbar navbar-expand-lg navbar-dark bg-dark"><div class="container px-lg-5"><a class="navbar-brand" href="index.html">Spatial Model Editor</a><button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbarSupportedContent" aria-controls="navbarSupportedContent" aria-expanded="false" aria-label="Toggle navigation"><span class="navbar-toggler-icon"></span></button><div class="collapse navbar-collapse" id="navbarSupportedContent"><ul class="navbar-nav ms-auto mb-2 mb-lg-0"><li class="nav-item"><a class="nav-link" href="index.html">Home</a></li><li class="nav-item"><a class="nav-link" href="features.html">Features</a></li><li class="nav-item"><a class="nav-link active" href="examples.html" aria-current="page">Examples</a></li><li class="nav-item"><a class="nav-link" href="news.html">News</a></li></ul></div></div></nav><div class="p-2 p-lg-4 text-center"><h1 class="display-5 fw-bold">Examples</h1></div><section class="pb-2 pb-lg-4"><div class="container px-lg-3"><div class="row align-items-center row-cols-1"><div class="col-lg-12 col-xxl-12 mb-5"><div class="card border-1 shadow-lg" id="grayscott"><div class="card-body text-center p-4 p-lg-2 pt-2 pt-lg-2"><div class="row justify-content-center p-2"><div class="col text-start"><a class="btn btn-outline-primary" href="https://spatial-model-editor.readthedocs.io/en/stable/sme/notebooks/visualization.html#Gray-Scott-Model" role="button"><i class="bi bi-file-earmark-code"></i>
+Source Code</a></div><div class="col"><h2 class="fs-4 fw-bold">Gray-Scott</h2></div><div class="col text-end"><a class="btn btn-outline-primary" href="https://colab.research.google.com/github/spatial-model-editor/spatial-model-editor/blob/master/docs/sme/notebooks/visualization.ipynb" role="button"><i class="bi bi-journal-code"></i>
+Interactive Notebook</a></div></div><div class="row"><p>The <a href="https://itp.uni-frankfurt.de/~gros/StudentProjects/Projects_2020/projekt_schulz_kaefer/">Gray-Scott</a> model is a simple spatial model with two species and two parameters, which forms spatial patterns that eventually reach a steady state distribution. It is one of the built in example models in Spatial Model Editor. Here the time evolution of the concentration of a species is shown for three values of the parameter f.
+</p></div><div class="row"><div class="embed-responsive"><video class="embed-responsive-item" controls autoplay loop muted width="100%" max-height="100%"><source src="assets/gray-scott.mp4" type="video/mp4"></video></div></div></div></div></div></div></div></section><script src="scripts.js"></script></body></html>