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Subset fix attempt2 #668

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Subset fix attempt2 #668

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aaacd9e
Update CellChat_class.R
bbergsneider Aug 10, 2023
9d8db9b
Merge pull request #1 from bbergsneider/subsetCellChat-fix
bbergsneider Aug 10, 2023
35e61eb
subset-fix-attempt2
bbergsneider Aug 10, 2023
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8 changes: 4 additions & 4 deletions R/CellChat_class.R
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Original file line number Diff line number Diff line change
Expand Up @@ -740,7 +740,7 @@ subsetCellChat <- function(object, cells.use = NULL, idents.use = NULL, group.by
images[[images.j]] <- values.new
}
if (images.j %in% c("distance")) {
values.new <- values[group.existing.index, group.existing.index, drop = FALSE]
values.new <- values[group.existing.index, group.existing.index, drop = FALSE] #line 743
images[[images.j]] <- values.new
}
}
Expand Down Expand Up @@ -812,7 +812,7 @@ subsetCellChat <- function(object, cells.use = NULL, idents.use = NULL, group.by
images[[images.j]] <- values.new
}
if (images.j %in% c("distance")) {
values.new <- values[group.existing.index, group.existing.index, drop = FALSE]
values.new <- values[group.existing.index, group.existing.index, drop = FALSE] #line 815
images[[images.j]] <- values.new
}
}
Expand All @@ -824,11 +824,11 @@ subsetCellChat <- function(object, cells.use = NULL, idents.use = NULL, group.by
for (net.j in names(net)) {
values <- net[[net.j]]
if (net.j %in% c("prob","pval")) {
values.new <- values[group.existing.index, group.existing.index, drop = FALSE]
values.new <- values[group.existing.index, group.existing.index, ,drop = FALSE] #line 827
net[[net.j]] <- values.new
}
if (net.j %in% c("count","sum","weight")) {
values.new <- values[group.existing.index, group.existing.index, drop = FALSE]
values.new <- values[group.existing.index, group.existing.index, drop = FALSE] #line 831
net[[net.j]] <- values.new
}
}
Expand Down