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192 Open 164 Closed
192 Open 164 Closed
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Issues list

createtsv output from foldseek search does not match the alignments in result2msa
#405 opened Jan 4, 2025 by shiraz-shah
3
Clustering performance issue: Foldseek exceeds expected runtime
#403 opened Dec 19, 2024 by YFeriel
2
foldseek result2msa a3m database contains unusable, non-significant alignments due to poor choice of cluster representative
#402 opened Dec 17, 2024 by shiraz-shah
foldseek result2msa on a clustering result creates an a3m database where cluster ids are inconsistent with createtsv output
#401 opened Dec 17, 2024 by shiraz-shah
foldseek createtsv on a clustering result outputs a tsv file where representatives are outliers, not centroids
#400 opened Dec 17, 2024 by shiraz-shah
2
foldseek cluster crashes with --cluster-reassign 1
#399 opened Dec 17, 2024 by shiraz-shah
3
Foldseek Query Inconsistency
#398 opened Dec 16, 2024 by yonatan212
Creating an tutorial video in japanese for Foldseek Search Server
#396 opened Dec 13, 2024 by yonesora56
1
Access to Multi-Domain Benchmark Dataset
#395 opened Dec 12, 2024 by nwod-edispu
Foldseek search database
#394 opened Dec 11, 2024 by jmoojun
Why the transformation matrix u and t are all zeros?
#393 opened Dec 6, 2024 by zzz14
6
Foldseek clustering stuck for days with errors
#390 opened Dec 2, 2024 by YFeriel
Behavior of --alt-ali in TM mode
#388 opened Nov 28, 2024 by yonatan212
1
Not dealing well with HETATM
#387 opened Nov 27, 2024 by jeversbioprodict
1
Getting BLAST-like e-value for TM-align?
#386 opened Nov 26, 2024 by meltzj
1
feature question: option to switch to mmseq2-gpu accelerated version
#384 opened Nov 25, 2024 by phil-gusev
API search error
#380 opened Nov 2, 2024 by dmath21
1
Expose increasing sensitivity search in FS
#379 opened Nov 2, 2024 by milot-mirdita
FoldSeek Score between two protein structures
#377 opened Oct 30, 2024 by JamberFX
1
Duplicate Foldseek hits for PDB 1hxz chain D searching pdb100
#376 opened Oct 29, 2024 by tomgoddard
Cluster 3di fasta file
#375 opened Oct 27, 2024 by schmigle
1
More columns to HTML formatted output enhancement New feature or request
#374 opened Oct 25, 2024 by jakewendt
Discrepancy between results from “foldseek prefilter” and “foldseek search”
#373 opened Oct 23, 2024 by kirinC0714
2
Sort the tabs when output in HTML format
#372 opened Oct 22, 2024 by jakewendt
Highly similar structures are clustered into separate groups or result in error
#371 opened Oct 22, 2024 by NatureGeorge
2
ProTip! no:milestone will show everything without a milestone.