Update the input file so it contains all default variables. #217

Job	Run time
Build stella quickly	1m 29s
Build stella in debug mode	1m 13s
build-stella (macos-13, Make)	5m 36s
build-stella (macos-13, CMake)	6m 25s
build-stella (macos-14, Make)	5m 30s
Automated Fortran tests	6m 20s
build-stella (macos-14, CMake)	4m 28s
build-stella (ubuntu-20.04, Make)	6m 2s
build-stella (ubuntu-20.04, CMake)	5m 41s
build-stella (ubuntu-22.04, Make)	3m 51s
build-stella (ubuntu-22.04, CMake)	3m 33s
build-stella (ubuntu-24.04, Make)	5m 40s
build-stella (ubuntu-24.04, CMake)	4m 3s
python-tests (1 - Does stella run )	41s
Python tests on 1 processor	2m 11s
python-tests (2 - Geometry)	41s
python-tests (3 - Gyrokinetic equation)	1m 28s
python-tests (4 - Flux tube)	48s
python-tests (5 - Diagnostics)	41s
python-tests (6 - Full Flux Surface)	56s
python-tests (7 - Electromagnetic effects)	1m 19s
	1h 8m 36s

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