SVIndelGenotyper was employed for analyzing the error profiles of indels and structural variants in deep sequencing data.
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SVIndelGenotyper depends on python >= 3.9.9
> git clone https://github.com/stjude/SVIndelGenotyper.git
> cd SVIndelGenotyper
> ./make_install.sh
SVIndelGenotyper has 2 subcommands:
indelgenotype indels for sequencing data (WGS/WES/RNASeq)svgenotype SVs for sequencing data (WGS)
> python SVIndelGenotyper.py indel testIndel.tsv
> python SVIndelGenotyper.py sv testSV.tsv
Manuscript under preparation
- Yanling.Liu[AT]stjude.org
- Pandurang.Kolekar[AT]stjude.org
- Xiaotu.Ma[AT]stjude.org
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