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Sunbeam Labs

Code related to the Sunbeam whole-genome shotgun sequencing pipeline

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  1. sunbeam sunbeam Public

    A robust, extensible metagenomics pipeline

    Python 163 39

  2. sbx_template sbx_template Public template

    Template for Sunbeam extensions.

    Python 3 2

Repositories

Showing 10 of 28 repositories
  • sbx_kraken Public

    Extension for running kraken2 and kraken2-biom

    sunbeam-labs/sbx_kraken’s past year of commit activity
    Python 0 1 1 0 Updated Jun 25, 2024
  • sbx_mapping Public

    Extension to map reads against a set of reference genomes

    sunbeam-labs/sbx_mapping’s past year of commit activity
    Python 0 1 1 0 Updated Jun 25, 2024
  • sunbeam Public

    A robust, extensible metagenomics pipeline

    sunbeam-labs/sunbeam’s past year of commit activity
    Python 163 39 17 3 Updated Jun 20, 2024
  • sbx_metaphlan4 Public

    Sunbeam extension for metaphlan 4 (compatible with sunbeam 4)

    sunbeam-labs/sbx_metaphlan4’s past year of commit activity
    Python 0 1 1 0 Updated Apr 23, 2024
  • sbx_coassembly Public

    Sunbeam extension to co-assemble metagenomic reads using Megahit

    sunbeam-labs/sbx_coassembly’s past year of commit activity
    Python 0 2 1 0 Updated Mar 29, 2024
  • sbx_assembly Public

    Sunbeam extension for assembly (megahit) and annotation (prodigal)

    sunbeam-labs/sbx_assembly’s past year of commit activity
    Python 0 0 0 1 Updated Mar 29, 2024
  • sbx_template Public template

    Template for Sunbeam extensions.

    sunbeam-labs/sbx_template’s past year of commit activity
    Python 3 2 0 0 Updated Mar 26, 2024
  • sbx_virus_id Public
    sunbeam-labs/sbx_virus_id’s past year of commit activity
    Python 0 0 5 1 Updated Mar 12, 2024
  • sbx_demic Public

    A sunbeam extension to run DEMIC, a peak-to-trough ratio generator for bacteria short-reads

    sunbeam-labs/sbx_demic’s past year of commit activity
    Perl 3 1 4 3 Updated Feb 8, 2024
  • sbx_genome_assembly Public
    sunbeam-labs/sbx_genome_assembly’s past year of commit activity
    Python 0 3 2 1 Updated Dec 21, 2023
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