Python scripts and jupyter notebooks for SMLM cluster analysis.
This code is a supplement to the publication:
Eiring, Patrick, Klein, Teresa, Backes, Simone, Streit, Marcel, Doose, Sören, Beliu, Gerti, Sauer, Markus, Jungblut, Marvin, Angew. Chem. Int. Ed. 2023, https://doi.org/10.1002/anie.202300821
The analysis code is presented as Jupyter notebooks that make use of python 3.9, locan 0.13 and python-based libraries as outlined in the requirements.in or environment.yml files.
Requirements files with frozen version numbers are provided.
You can install all packages in a conda environment (we recommend using mamba)
mamba env create --file py39-environment.yml
or via pip
pip install -r py39-requirements.txt --no-deps
Distributed under the terms of the BSD-3 License, this code is free and open source software.