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Added model 235 - breast cancer signalling pathways MDAMB231 complete
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Natalia Florekova
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Sep 22, 2024
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...r-110]__[in-7]__[BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE]/README.md
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# \[235\] BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE | ||
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- Variables: 110 | ||
- Inputs: 7 | ||
- Regulations: 270 | ||
- Publication: https://doi.org/10.1371/journal.pone.0298788 | ||
- Source: https://github.com/Ktaoma/BoolSyn | ||
- Keywords: source (?), curated (?), repaired (?), multi-valued (?) | ||
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### Modifications | ||
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Removed regulations: | ||
PG, PG | ||
NRG1, NRG1 | ||
INS, INS | ||
ES, ES | ||
EGF, EGF | ||
DLL_i, DLL_i | ||
IGF1, IGF1 | ||
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Regulation: | ||
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CYCLIN_D_c, (((TEAD1 | TCF4 | STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3) | ||
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was updated to: | ||
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CYCLIN_D_c, (((STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3) | ||
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as the analysis stated that TEAD1 and TCF4 have no effect on CYCLIN_D_c. | ||
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### Model citation | ||
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``` | ||
@article{bbm-235, | ||
author = {Taoma, Kittisak and Ruengjitchatchawalya, Marasri and Liangruksa, Monrudee and Laomettachit, Teeraphan}, | ||
year = {2024}, | ||
doi = {https://doi.org/10.1371/journal.pone.0298788}, | ||
title = {Boolean modeling of breast cancer signaling pathways uncovers mechanisms of drug synergy}, | ||
publisher = {PLOS ONE} | ||
} | ||
``` | ||
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...]__[var-110]__[in-7]__[BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE]/metadata.json
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{ | ||
"id": 235, | ||
"name": "BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE", | ||
"url-publication": "https://doi.org/10.1371/journal.pone.0298788", | ||
"url-model": "https://github.com/Ktaoma/BoolSyn", | ||
"keywords": [ | ||
"source (?)", | ||
"curated (?)", | ||
"repaired (?)", | ||
"multi-valued (?)" | ||
], | ||
"variables": 110, | ||
"inputs": 7, | ||
"regulations": 270, | ||
"notes": "### Modifications\n\nRemoved regulations:\nPG, PG\nNRG1, NRG1\nINS, INS\nES, ES\nEGF, EGF\nDLL_i, DLL_i\nIGF1, IGF1\n\nRegulation:\n\nCYCLIN_D_c, (((TEAD1 | TCF4 | STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)\n\nwas updated to:\n\nCYCLIN_D_c, (((STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)\n\nas the analysis stated that TEAD1 and TCF4 have no effect on CYCLIN_D_c.\n", | ||
"bib": "@article{bbm-235,\n\tauthor = {Taoma, Kittisak and Ruengjitchatchawalya, Marasri and Liangruksa, Monrudee and Laomettachit, Teeraphan},\n\tyear = {2024},\n\tdoi = {https://doi.org/10.1371/journal.pone.0298788},\n\ttitle = {Boolean modeling of breast cancer signaling pathways uncovers mechanisms of drug synergy},\n\tpublisher = {PLOS ONE}\n}\n\n" | ||
} |
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