Skip to content

Commit

Permalink
Added model 235 - breast cancer signalling pathways MDAMB231 complete
Browse files Browse the repository at this point in the history
  • Loading branch information
Natalia Florekova committed Sep 22, 2024
1 parent a90fa29 commit 1f18cc5
Show file tree
Hide file tree
Showing 12 changed files with 693 additions and 1 deletion.
Original file line number Diff line number Diff line change
@@ -0,0 +1,46 @@
# \[235\] BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE

- Variables: 110
- Inputs: 7
- Regulations: 270
- Publication: https://doi.org/10.1371/journal.pone.0298788
- Source: https://github.com/Ktaoma/BoolSyn
- Keywords: source (?), curated (?), repaired (?), multi-valued (?)


### Modifications

Removed regulations:
PG, PG
NRG1, NRG1
INS, INS
ES, ES
EGF, EGF
DLL_i, DLL_i
IGF1, IGF1

Regulation:

CYCLIN_D_c, (((TEAD1 | TCF4 | STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)

was updated to:

CYCLIN_D_c, (((STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)

as the analysis stated that TEAD1 and TCF4 have no effect on CYCLIN_D_c.


### Model citation

```
@article{bbm-235,
author = {Taoma, Kittisak and Ruengjitchatchawalya, Marasri and Liangruksa, Monrudee and Laomettachit, Teeraphan},
year = {2024},
doi = {https://doi.org/10.1371/journal.pone.0298788},
title = {Boolean modeling of breast cancer signaling pathways uncovers mechanisms of drug synergy},
publisher = {PLOS ONE}
}
```

Original file line number Diff line number Diff line change
@@ -0,0 +1,17 @@
{
"id": 235,
"name": "BREAST-CANCER-SIGNALLING-PATHWAYS-MDAMB231-COMPLETE",
"url-publication": "https://doi.org/10.1371/journal.pone.0298788",
"url-model": "https://github.com/Ktaoma/BoolSyn",
"keywords": [
"source (?)",
"curated (?)",
"repaired (?)",
"multi-valued (?)"
],
"variables": 110,
"inputs": 7,
"regulations": 270,
"notes": "### Modifications\n\nRemoved regulations:\nPG, PG\nNRG1, NRG1\nINS, INS\nES, ES\nEGF, EGF\nDLL_i, DLL_i\nIGF1, IGF1\n\nRegulation:\n\nCYCLIN_D_c, (((TEAD1 | TCF4 | STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)\n\nwas updated to:\n\nCYCLIN_D_c, (((STAT3) & !(GSK3B & (CDKN2A & P21)))) & (EIF4E & MYC & STAT3)\n\nas the analysis stated that TEAD1 and TCF4 have no effect on CYCLIN_D_c.\n",
"bib": "@article{bbm-235,\n\tauthor = {Taoma, Kittisak and Ruengjitchatchawalya, Marasri and Liangruksa, Monrudee and Laomettachit, Teeraphan},\n\tyear = {2024},\n\tdoi = {https://doi.org/10.1371/journal.pone.0298788},\n\ttitle = {Boolean modeling of breast cancer signaling pathways uncovers mechanisms of drug synergy},\n\tpublisher = {PLOS ONE}\n}\n\n"
}
Loading

0 comments on commit 1f18cc5

Please sign in to comment.