Input:
computeMatrix工具得到的输出的压缩.gz矩阵文件
Usage:
python gzConvertToGgplotFormat.py --input sample.gz --outputPrefix ... [option]
optional arguments:
-h, --help show this help message and exit
--input INPUT, -I INPUT
Input of gz format file
--outputPrefix OUTPUTPREFIX, -O OUTPUTPREFIX
PrefixName of the result file
--averageType AVERAGETYPE, -t AVERAGETYPE
The type of statistic that should be used for the profile. The options are:"mean","median","min","max","sum","std";
Specify more than one averageType, separate with commas
--sample SAMPLE, -s SAMPLE
Enter the sample list to be extracted, separated by commas: sample1,sample2,...,sampleN
Output:
| bin | mean | ... | sampleName | peakName |
|---|---|---|---|---|
| 1 | 0.037430114503816794 | ... | H3K27ac | promoter.trio |
| 2 | 0.03541725190839695 | ... | H3K27ac | promoter.trio |
| 3 | 0.03517291348600509 | ... | H3K27ac | promoter.trio |
| 4 | 0.03546380152671756 | ... | H3K27ac | promoter.trio |
| 5 | 0.034288638676844785 | ... | H3K27ac | promoter.trio |
| 6 | 0.03518454961832061 | ... | H3K27ac | promoter.trio |
| 7 | 0.036569127226463105 | ... | H3K27ac | promoter.trio |
| 8 | 0.03578956488549618 | ... | H3K27ac | promoter.trio |
| 9 | 0.033881422391857506 | ... | H3K27ac | promoter.trio |
| 10 | 0.03516126717557252 | ... | H3K27ac | promoter.trio |
输出文件为可以直接用来作图的整合矩阵,第一列为bin编号,第二列...指定列为峰信号均值[...其他统计值],倒数第二列为样本名,倒数第一列为peak名.
对比(曲线一致,前者是自动作图,后者是用graphpad作图):
Before :
After :
