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add example of parsing slicer angles to docs #19

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merged 3 commits into from
Jun 8, 2024

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braxtonowens
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Added simple slan example to usage. Let me know if I should explain more.

Things I can add:

  1. Why orientations matter? (macro molecular complexes are at times easier to see at different views through the tomogram)
  2. Preprocessing for Machine learning. For example, the dataset used for this kaggle competition used the angles in combination with IMOD's rotatevol() function to get the best looking slices from the tomogram.

By the way, this is hopefully going to be used by the cryoet data portal for converting .mod to .ndjson. They would consider these annotations to be oriented points which I believe napari can handle.

@alisterburt
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Great stuff! Will modify slightly and merge :)

@alisterburt
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Cool ML challenge!

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@alisterburt alisterburt left a comment

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Excellent work @braxtonowens - thanks for taking the time!

I like your extra explanations and adding another page called 'working with slicer angles' or similar would be a great addition! Will merge here now but do feel free to follow up if you would like 🙂

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@alisterburt alisterburt merged commit 6e7d464 into teamtomo:main Jun 8, 2024
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@alisterburt alisterburt changed the title slan example add example of parsing slicer angles to docs Jun 8, 2024
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2 participants