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Fix dataloading issues #28

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LorenzLamm merged 1 commit into main from fix_dataloading_issues

Jul 27, 2023

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LorenzLamm commented Jul 27, 2023

mrcfile should open files with permissive=True argument and make a copy of the tomogram data to prevent writing permission issues.


          Fix voxel size loading

772b05b

LorenzLamm commented

View reviewed changes

src/membrain_seg/segmentation/dataloading/data_utils.py

@@ @@ -241,17 +241,18 @@ def load_tomogram( @@
                       data = tomogram.data.copy()
                       data = np.transpose(data, (2, 1, 0))
                       header = tomogram.header
+                      voxel_size = tomogram.voxel_size

Collaborator Author

LorenzLamm Jul 27, 2023

Need to define voxel size here. Later tomogram.header will return None

LorenzLamm marked this pull request as ready for review

July 27, 2023 10:41

LorenzLamm merged commit 70313eb into main

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