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alisterburt committed Aug 7, 2024
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14 changes: 11 additions & 3 deletions src/index.md
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[=10% ]{: .candystripe .candystripe-animate}

!!! note "Why?"
<div align="center">

<h4>Looking for the HIV processing guide?</h4>

Python is a great language for image analysis, but cryo-EM has a bunch
of domain specific nonsense.
<a href="https://teamtomo.github.io/teamtomo-site-archive">teamtomo.github.io/teamtomo-site-archive</a>

</div>

**The goal is to provide:**

- [x] a place for high quality Python packages that the community can rely on
- [x] a place for developers to learn and build things together


!!! note "Why?"

Python is a great language for image analysis. We make interacting with and
analysing cryo-EM data from Python easier by providing useful packages.

-----

:wave: *Feel free to look around, but please be aware that this site is
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13 changes: 7 additions & 6 deletions src/site/packages.md
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# TeamTomo Packages
# Packages

TeamTomo packages are Python code you can use in your own projects!
TeamTomo packages are Python code you can depend on for use in your own projects!

## input / output

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- :material-star:{ .lg .middle } [__starfile__](https://teamtomo.org/starfile)
- :simple-materialdesignicons:{ .lg .middle } [__imodmodel__](https://teamtomo.org/imodmodel)
- :fontawesome-regular-file-lines:{ .lg .middle } [__mdocfile__](https://teamtomo.org/mdocfile)
- :material-scale-balance:{ .lg .middle } [__emfile__](https://github.com/teamtomo/emfile)
- :material-scale-balance:{ .lg .middle } [__dynamotable__](https://github.com/teamtomo/dynamotable)
- :material-scale-balance:{ .lg .middle } [__mmdf__](https://github.com/teamtomo/mmdf)
- :material-image-outline:{ .lg .middle } [__emfile__](https://github.com/teamtomo/emfile)
- :fontawesome-regular-file-lines:{ .lg .middle } [__dynamotable__](https://github.com/teamtomo/dynamotable)
- :material-axis-arrow:{ .lg .middle } [__mmdf__](https://github.com/teamtomo/mmdf)
</div>

## image analysis

Some of the image processing we do in cryo-EM is domain specific.

These packages for image analysis help you to explore your new ideas without reinventing the wheel.
Many are implemented in PyTorch, this means they can run on GPUs and make use of autodiff.
Many are implemented in PyTorch, this means they can run on GPUs and make use of autodiff
for parameter optimisation.

<div class="grid cards" markdown>
- :fontawesome-regular-file-lines:{ .lg .middle } [__torch-fourier-slice__](https://github.com/teamtomo/torch-fourier-slice)
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