Differential spatially variable genes
Please refer to the documentation, in particular, the API documentation.
You need to have Python 3.12 or newer installed on your system. If you don't have Python installed, we recommend installing uv.
We recommend managing dependencies in project-specific virtual environments to avoid dependency conflicts. This is most convenient using package managers such as uv. Choose from the options below to install diffsvg:
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Install the latest development version:
pip install git+https://github.com/theislab/diffsvg.git # (or `uv add`)
The default inference is exact and needs no sampler. To use NUTS (inference="nuts", only needed for non-normal priors), install the optional extra: pip install "diffsvg[pymc] @ git+https://github.com/theislab/diffsvg.git".
See the changelog.
For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.
t.b.a