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parameter for squidpy connectivities key #43

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parameter for squidpy connectivities key #43

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FrancescaDr
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Added a connectivities_key parameter to the AnnData2Data classes. This allow you to pass your own parameter key for the connectivities if you have calculated the squidgy spatial graph up front (for some more flexible graph initialisation).

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codecov bot commented Sep 6, 2023

Codecov Report

Merging #43 (663ff7a) into main (4ce1212) will increase coverage by 58.78%.
The diff coverage is 85.71%.

Additional details and impacted files
@@            Coverage Diff             @@
##            main      #43       +/-   ##
==========================================
+ Coverage   0.00%   58.78%   +58.78%     
==========================================
  Files          3        3               
  Lines        163      165        +2     
==========================================
+ Hits           0       97       +97     
+ Misses       163       68       -95     
Flag Coverage Δ
unittests 58.78% <85.71%> (+58.78%) ⬆️

Flags with carried forward coverage won't be shown. Click here to find out more.

Files Changed Coverage Δ
src/geome/transforms.py 73.33% <66.66%> (+73.33%) ⬆️
src/geome/anndata2data.py 92.59% <100.00%> (+92.59%) ⬆️

@selmanozleyen
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sorry a bit late with this but the new merge should provide this

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2 participants