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Add WIP map view #536

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6 changes: 6 additions & 0 deletions package-lock.json

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66 changes: 56 additions & 10 deletions taxonium_component/src/Deck.jsx
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We seem to have ended up with the zoom controls repeated 2x, once on the map and once on the tree. (I'd say they are better just on the tree).

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Is there a usecase where zooming into the map would be helpful? I was assuming that users may want to zoom into part of the map to view pie charts in only certain regions (eventually), but maybe you had a different idea here. Would the map view be fully zoomed out by default if we remove the zoom functionality?

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Yes, there might be use cases where zooming would be useful - but atm the buttons on the map affect the tree so this is not achieved. I don't see a strong need for zoom buttons for the map -- as opposed to panning and scrolling -- we need them for the tree due to separate X and Y zooms.

Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,6 @@ import React, { useState, useCallback, useRef } from "react";
import DeckGL from "@deck.gl/react";
import { View } from "@deck.gl/core";
import useLayers from "./hooks/useLayers";
import JBrowsePanel from "./components/JBrowsePanel";
import { ClipLoader } from "react-spinners";
import {
CircularProgressbarWithChildren,
Expand All @@ -19,9 +18,9 @@ import DeckSettingsModal from "./components/DeckSettingsModal";
import { TreenomeButtons } from "./components/TreenomeButtons";
import TreenomeModal from "./components/TreenomeModal";
import FirefoxWarning from "./components/FirefoxWarning";
import { JBrowseErrorBoundary } from "./components/JBrowseErrorBoundary";
import ColorSettingModal from "./components/ColorSettingModal";
import Key from "./components/Key";
import ColorSettingModal from "./components/ColorSettingModal";
import TreenomeBrowser from "./components/TreenomeBrowser";

const MemoizedKey = React.memo(Key);

Expand Down Expand Up @@ -359,12 +358,7 @@ function Deck({
}}
>
<span ref={jbrowseRef}>
<JBrowseErrorBoundary>
<JBrowsePanel
treenomeState={treenomeState}
settings={settings}
/>
</JBrowseErrorBoundary>
<TreenomeBrowser state={treenomeState} settings={settings} />
<TreenomeModal
treenomeSettingsOpen={treenomeSettingsOpen}
setTreenomeSettingsOpen={setTreenomeSettingsOpen}
Expand All @@ -384,7 +378,59 @@ function Deck({
settings={settings}
/>
</View>
<View id="main"></View>

<View id="map">
<div
id="map-div"
key={"map-div-key"}
style={{
width: "100%",
height: "100%",
borderLeftWidth: "1px",
borderColor: "black",
borderStyle: "solid",
position: "relative",
zIndex: 2,
}}
></div>
</View>

<View id="main">
<NodeHoverTip
hoverInfo={hoverInfo}
hoverDetails={hoverDetails}
colorHook={colorHook}
colorBy={colorBy}
config={config}
filterMutations={settings.filterMutations}
deckSize={deckSize}
/>
<TreenomeMutationHoverTip
hoverInfo={hoverInfo}
hoverDetails={hoverDetails}
colorHook={colorHook}
colorBy={colorBy}
config={config}
treenomeReferenceInfo={treenomeReferenceInfo}
/>
<MemoizedKey
keyStuff={keyStuff}
colorByField={colorBy.colorByField}
colorByGene={colorBy.colorByGene}
colorByPosition={colorBy.colorByPosition}
config={config}
/>
<DeckButtons
zoomReset={zoomReset}
zoomIncrement={zoomIncrement}
zoomAxis={zoomAxis}
setZoomAxis={setZoomAxis}
snapshot={snapshot}
loading={data.status === "loading"}
requestOpenSettings={() => setDeckSettingsOpen(true)}
settings={settings}
/>
</View>
</DeckGL>
</div>
);
Expand Down
27 changes: 27 additions & 0 deletions taxonium_component/src/components/SearchPanel.jsx
Original file line number Diff line number Diff line change
Expand Up @@ -317,6 +317,33 @@ function SearchPanel({
</button>
</span>
)}
{<br />}
{true && (
<span>
<span className="text-gray-500 text-sm">Map View:</span>
<input
name="mapEnabled"
style={{ verticalAlign: "middle" }}
type="checkbox"
className="m-3 inline-block"
checked={settings.mapViewOpen}
onChange={(e) => {
settings.setMapOpenAndToast(!settings.mapViewOpen);
}}
/>
<button
style={{ cursor: "default" }}
data-tip="Display a map with points corresponding to the location a sample was collected."
data-html={true}
>
<span
style={{ display: "inline-block", verticalAlign: "middle" }}
>
<BsQuestionCircle />
</span>
</button>
</span>
)}
</div>
<div className="py-3 space-y-2">
<div className="flex space-x-2">
Expand Down
10 changes: 10 additions & 0 deletions taxonium_component/src/components/TreenomeBrowser.jsx
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
import JBrowsePanel from "./JBrowsePanel";
import { JBrowseErrorBoundary } from "./JBrowseErrorBoundary";

export default function TreenomeBrowser({ state, settings }) {
return (
<JBrowseErrorBoundary>
<JBrowsePanel treenomeState={state} settings={settings} />
</JBrowseErrorBoundary>
);
}
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