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Update DOI for JOSS
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titipata committed Feb 8, 2020
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# Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset

[![License](https://img.shields.io/badge/License-MIT-blue.svg)](https://github.com/titipata/pubmed_parser/blob/master/LICENSE) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3648715.svg)](https://doi.org/10.5281/zenodo.3648715) [![Build Status](https://travis-ci.com/titipata/pubmed_parser.svg?branch=master)](https://travis-ci.com/titipata/pubmed_parser)
[![License](https://img.shields.io/badge/License-MIT-blue.svg)](https://github.com/titipata/pubmed_parser/blob/master/LICENSE) [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.3648715.svg)](https://doi.org/10.5281/zenodo.3659990) [![Build Status](https://travis-ci.com/titipata/pubmed_parser.svg?branch=master)](https://travis-ci.com/titipata/pubmed_parser)

Pubmed Parser is a Python library for parsing the [PubMed Open-Access (OA) subset](http://www.ncbi.nlm.nih.gov/pmc/tools/ftp/)
, [MEDLINE XML](https://www.nlm.nih.gov/bsd/licensee/) repositories, and [Entrez Programming Utilities (E-utils)](https://eutils.ncbi.nlm.nih.gov/). It uses `lxml` library to parse this information into a Python dictionary which can be easily used for research such in text mining and natural language processing pipelines. See
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If you use Pubmed Parser, please cite it as follows

> Titipat Achakulvisut, Daniel E. Acuna (2015) "_Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset_" [http://github.com/titipata/pubmed_parser](http://github.com/titipata/pubmed_parser). doi:10.5281/zenodo.3648715
> Titipat Achakulvisut, Daniel E. Acuna (2015) "_Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset_" [http://github.com/titipata/pubmed_parser](http://github.com/titipata/pubmed_parser). doi:10.5281/zenodo.3659990
or using BibTex

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publisher = {GitHub},
journal = {GitHub repository},
howpublished = {\url{http://github.com/titipata/pubmed_parser}},
doi = {10.5281/zenodo.3648715}
doi = {10.5281/zenodo.3659990}
}
```

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