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Original file line number Diff line number Diff line change
@@ -0,0 +1,57 @@
# Generated by Django 4.2.24 on 2025-09-04 16:00

import django.core.validators
from django.db import migrations, models
import django.db.models.deletion


class Migration(migrations.Migration):

dependencies = [
('proteins', '0055_spectrum_status_spectrum_status_changed'),
]

operations = [
migrations.AddField(
model_name='camera',
name='full_well_capacity',
field=models.PositiveIntegerField(blank=True, help_text='Full well capacity in electrons', null=True),
),
migrations.AddField(
model_name='camera',
name='pixel_size',
field=models.FloatField(blank=True, help_text="Pixel size in microns e.g. '6.5'. (assumes square pixels)", null=True, validators=[django.core.validators.MinValueValidator(0.0001)]),
),
migrations.AddField(
model_name='camera',
name='pixels_height',
field=models.PositiveIntegerField(blank=True, null=True),
),
migrations.AddField(
model_name='camera',
name='pixels_width',
field=models.PositiveIntegerField(blank=True, null=True),
),
migrations.CreateModel(
name='CameraMode',
fields=[
('id', models.BigAutoField(auto_created=True, primary_key=True, serialize=False, verbose_name='ID')),
('name', models.CharField(help_text="e.g. 'HCG 12-bit fast', 'LCG 16-bit slow', 'EM gain 300'", max_length=128)),
('adc_bit_depth', models.PositiveIntegerField(blank=True, help_text='e.g. 12, 14, 16', null=True)),
('readout_rate_mhz', models.FloatField(blank=True, help_text='Pixel clock / ADC rate (MHz) if applicable', null=True, validators=[django.core.validators.MinValueValidator(0)])),
('temperature_setpoint_c', models.FloatField(blank=True, help_text='Cooling setpoint (°C). Dark current depends on this.', null=True)),
('dark_current', models.FloatField(blank=True, help_text='Electrons/pixel/second at the stated temperature', null=True, validators=[django.core.validators.MinValueValidator(0)])),
('read_noise_median', models.FloatField(blank=True, help_text='e- median', null=True, validators=[django.core.validators.MinValueValidator(0)])),
('read_noise_rms', models.FloatField(blank=True, help_text='e- RMS', null=True, validators=[django.core.validators.MinValueValidator(0)])),
('frame_rate', models.FloatField(blank=True, help_text='Max full-chip FPS under this mode.', null=True, validators=[django.core.validators.MinValueValidator(0)])),
('camera', models.ForeignKey(on_delete=django.db.models.deletion.CASCADE, related_name='modes', to='proteins.camera')),
],
options={
'indexes': [models.Index(fields=['camera', 'name'], name='proteins_ca_camera__0953d7_idx')],
},
),
migrations.AddConstraint(
model_name='cameramode',
constraint=models.UniqueConstraint(fields=('camera', 'name'), name='unique_camera_mode'),
),
]
60 changes: 60 additions & 0 deletions backend/proteins/models/spectrum.py
Original file line number Diff line number Diff line change
Expand Up @@ -55,6 +55,66 @@ def d3_dicts(self):

class Camera(SpectrumOwner, Product):
manufacturer = models.CharField(max_length=128, blank=True)
full_well_capacity = models.PositiveIntegerField(
null=True, blank=True, help_text="Full well capacity in electrons"
)
pixel_size = models.FloatField(
null=True,
blank=True,
help_text="Pixel size in microns e.g. '6.5'. (assumes square pixels)",
validators=[MinValueValidator(0.0001)], # Must be > 0
)
pixels_width = models.PositiveIntegerField(null=True, blank=True)
pixels_height = models.PositiveIntegerField(null=True, blank=True)


class CameraMode(models.Model):
"""
An operating mode for a specific Camera.
Mode-dependent fields: read noise, dark current (temp), frame rate, etc.
"""

camera = models.ForeignKey(Camera, on_delete=models.CASCADE, related_name="modes")
name = models.CharField(max_length=128, help_text="e.g. 'HCG 12-bit fast', 'LCG 16-bit slow', 'EM gain 300'")

# Typical toggles that affect performance
adc_bit_depth = models.PositiveIntegerField(null=True, blank=True, help_text="e.g. 12, 14, 16")
readout_rate_mhz = models.FloatField(
null=True,
blank=True,
validators=[MinValueValidator(0)],
help_text="Pixel clock / ADC rate (MHz) if applicable",
)

# Conditions
temperature_setpoint_c = models.FloatField(
null=True, blank=True, help_text="Cooling setpoint (°C). Dark current depends on this."
)

# Performance (mode-dependent)
dark_current = models.FloatField(
null=True,
blank=True,
validators=[MinValueValidator(0)],
help_text="Electrons/pixel/second at the stated temperature",
)
read_noise_median = models.FloatField(
null=True, blank=True, validators=[MinValueValidator(0)], help_text="e- median"
)
read_noise_rms = models.FloatField(null=True, blank=True, validators=[MinValueValidator(0)], help_text="e- RMS")
frame_rate = models.FloatField(
null=True,
blank=True,
validators=[MinValueValidator(0)],
help_text="Max full-chip FPS under this mode.",
)

class Meta:
constraints = [models.UniqueConstraint(fields=["camera", "name"], name="unique_camera_mode")]
indexes = [models.Index(fields=["camera", "name"])]

def __str__(self):
return f"{self.camera} - {self.name}"


class Light(SpectrumOwner, Product):
Expand Down
19 changes: 19 additions & 0 deletions backend/references/migrations/0008_alter_reference_year.py
Original file line number Diff line number Diff line change
@@ -0,0 +1,19 @@
# Generated by Django 4.2.24 on 2025-09-04 16:00

import django.core.validators
from django.db import migrations, models


class Migration(migrations.Migration):

dependencies = [
('references', '0007_alter_reference_year'),
]

operations = [
migrations.AlterField(
model_name='reference',
name='year',
field=models.PositiveIntegerField(help_text='YYYY', validators=[django.core.validators.MinLengthValidator(4), django.core.validators.MaxLengthValidator(4), django.core.validators.MinValueValidator(1960), django.core.validators.MaxValueValidator(2026)]),
),
]