debug #213
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Linux CI | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| # check for duplicate jobs | |
| pre_job: | |
| # continue-on-error: true # Uncomment once integration is finished | |
| runs-on: ubuntu-20.04 | |
| outputs: | |
| should_skip: ${{ steps.skip_check.outputs.should_skip }} | |
| steps: | |
| - id: skip_check | |
| uses: fkirc/[email protected] | |
| with: | |
| concurrent_skipping: "same_content_newer" | |
| skip_after_successful_duplicate: "true" | |
| paths_ignore: '["**/README.md", "**/docs/**"]' | |
| do_not_skip: '["workflow_dispatch", "schedule"]' | |
| build: | |
| needs: pre_job | |
| if: needs.pre_job.outputs.should_skip != 'true' | |
| name: ${{ matrix.name }} ${{ matrix.build_type }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CTEST_OUTPUT_ON_FAILURE: ON | |
| CTEST_PARALLEL_LEVEL: 2 | |
| CMAKE_BUILD_TYPE: ${{ matrix.build_type }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| name: [ | |
| ubuntu-20.04-gcc-7, | |
| ubuntu-20.04-gcc-9, | |
| ubuntu-20.04-clang-9, | |
| ] | |
| build_type: [Debug, Release] | |
| include: | |
| - name: ubuntu-20.04-gcc-7 | |
| os: ubuntu-20.04 | |
| compiler: gcc | |
| version: "7" | |
| boost-version: "1.74.0" | |
| eigen-version: "3.3.9" | |
| gtsam-version: "4.2" | |
| highfive-version: "v2.8.0" | |
| - name: ubuntu-20.04-gcc-9 | |
| os: ubuntu-20.04 | |
| compiler: gcc | |
| version: "9" | |
| boost-version: "1.74.0" | |
| eigen-version: "3.3.9" | |
| gtsam-version: "4.2" | |
| highfive-version: "v2.8.0" | |
| - name: ubuntu-20.04-clang-9 | |
| os: ubuntu-20.04 | |
| compiler: clang | |
| version: "9" | |
| boost-version: "1.74.0" | |
| eigen-version: "3.3.9" | |
| gtsam-version: "4.2" | |
| highfive-version: "v2.8.0" | |
| steps: | |
| - name: print skip check results | |
| run: echo "should_skip=${{ needs.pre_job.outputs.should_skip }}, reason is ${{ needs.pre_job.outputs.reason }}" | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Print job details | |
| run: | | |
| echo "Job ${{ env.GITHUB_JOB }}" | |
| echo "compiler: '${{matrix.compiler}}'" | |
| echo "matrix name: '${{matrix.name}}" | |
| echo "build type: '${{ matrix.build_type }}'" | |
| - name: Install Eigen ${{ matrix.eigen-version }} | |
| run: | | |
| cd ${{runner.workspace}} # cd to runner home | |
| git clone --depth 1 --branch ${{ matrix.eigen-version }} https://gitlab.com/libeigen/eigen eigen3 | |
| cd eigen3 && mkdir build && cd build # move into build dir for eigen3 | |
| cmake .. | |
| sudo make -j$(nproc) install | |
| - name: Install Python 3.9 | |
| run: | | |
| if ["${{matrix.os}}"="ubuntu-18.04"]; then | |
| sudo apt-get -y install libpython-dev python-numpy | |
| else # Ubuntu 20.04 | |
| sudo apt-get -y install libpython3-dev python-numpy | |
| fi | |
| - name: Install build tools | |
| run: | | |
| # LLVM (clang) 9 is not in Bionic's repositories so we add the official LLVM repository. | |
| if [ "${{ matrix.compiler }}" = "clang" ] && [ "${{ matrix.version }}" = "9" ] && [ "${{matrix.os}}"="ubuntu-18.04" ]; then | |
| # (ipv4|ha).pool.sks-keyservers.net is the SKS GPG global keyserver pool | |
| # ipv4 avoids potential timeouts because of crappy IPv6 infrastructure | |
| # 15CF4D18AF4F7421 is the GPG key for the LLVM apt repository | |
| # This key is not in the keystore by default for Ubuntu so we need to add it. | |
| LLVM_KEY=15CF4D18AF4F7421 | |
| gpg --keyserver keyserver.ubuntu.com --recv-key $LLVM_KEY || gpg --keyserver hkp://keyserver.ubuntu.com:80 --recv-key $LLVM_KEY | |
| gpg -a --export $LLVM_KEY | sudo apt-key add - | |
| sudo add-apt-repository "deb http://apt.llvm.org/bionic/ llvm-toolchain-bionic-9 main" | |
| fi | |
| sudo apt-get -y update | |
| sudo apt-get -y install cmake build-essential pkg-config libicu-dev | |
| if [ "${{ matrix.compiler }}" = "gcc" ]; then | |
| sudo apt-get install -y g++-${{ matrix.version }} g++-${{ matrix.version }}-multilib | |
| echo "CC=gcc-${{ matrix.version }}" >> $GITHUB_ENV | |
| echo "CXX=g++-${{ matrix.version }}" >> $GITHUB_ENV | |
| else | |
| sudo apt-get install -y clang-${{ matrix.version }} g++-multilib | |
| echo "CC=clang-${{ matrix.version }}" >> $GITHUB_ENV | |
| echo "CXX=clang++-${{ matrix.version }}" >> $GITHUB_ENV | |
| fi | |
| - name: Install Boost ${{ matrix.boost-version }} | |
| run: | | |
| BOOST_FOLDER=$(echo "boost_${{ matrix.boost-version }}" | tr '.' '_') | |
| wget https://boostorg.jfrog.io/artifactory/main/release/${{ matrix.boost-version }}/source/${BOOST_FOLDER}.tar.gz | |
| tar -zxf ${BOOST_FOLDER}.tar.gz | |
| cd ${BOOST_FOLDER}/ | |
| ./bootstrap.sh --with-libraries=serialization,filesystem,thread,system,atomic,date_time,timer,chrono,program_options,regex | |
| sudo ./b2 -j$(nproc) install | |
| - name: Install GTSAM ${{ matrix.gtsam-version }} | |
| run: | | |
| cd ${{runner.workspace}} # cd to runner home | |
| git clone --depth 1 --branch ${{ matrix.gtsam-version }} https://github.com/borglab/gtsam.git gtsam | |
| cd gtsam && mkdir build && cd build # move into build dir for gtsam | |
| cmake -DCMAKE_BUILD_TYPE=Release -DGTSAM_WITH_EIGEN_MKL=OFF -DGTSAM_BUILD_EXAMPLES_ALWAYS=OFF -DGTSAM_BUILD_TIMING_ALWAYS=OFF -DGTSAM_BUILD_TESTS=OFF -DGTSAM_BUILD_UNSTABLE=OFF -DGTSAM_UNSTABLE_BUILD_PYTHON=OFF .. | |
| sudo make -j$(nproc) install | |
| - name: Install hdf5 | |
| run: sudo apt-get -y install libhdf5-serial-dev | |
| - name: Install HighFive ${{ matrix.highfive-version }} | |
| run: | | |
| cd ${{runner.workspace}} # cd to runner home | |
| git clone --depth 1 --branch ${{ matrix.highfive-version }} https://github.com/BlueBrain/HighFive HighFive | |
| cd HighFive && mkdir build && cd build # move into build dir for HighFive | |
| cmake -DHIGHFIVE_USE_BOOST=OFF .. | |
| sudo make -j$(nproc) install | |
| - name: Install LCov | |
| if: matrix.name == 'ubuntu-20.04-gcc-9' && matrix.build_type == 'Debug' | |
| run: sudo apt-get update -q && sudo apt-get install lcov -q -y | |
| - name: Build bioslam | |
| run: | | |
| cd ${{github.workspace}} # cd to repo root | |
| mkdir build && cd build # move into bioslam build dir | |
| cmake -DBIOSLAM_BUILD_MATLAB_WRAPPER=OFF .. | |
| sudo make -j$(nproc) install | |
| - name: Test bioslam | |
| run: | | |
| cd ${{github.workspace}}/build | |
| make -j$(nproc) test | |
| - name: Run LCov | |
| if: matrix.name == 'ubuntu-20.04-gcc-9' && matrix.build_type == 'Debug' | |
| run: | | |
| cd ${{github.workspace}}/build # cd to build folder | |
| lcov -c -d . --include '*bioslam*' -o main_coverage.info | |
| - name: Submit to codecov.io | |
| if: matrix.name == 'ubuntu-20.04-gcc-9' && matrix.build_type == 'Debug' | |
| uses: codecov/codecov-action@v3 | |
| with: | |
| files: ${{github.workspace}}/build/main_coverage.info | |
| token: ${{ secrets.CODECOV_TOKEN }} # supposedly not required for public repos, but codecov fails otherwise | |
| name: bioslam-codecov # optional | |
| fail_ci_if_error: true # optional (default = false) | |
| verbose: true # optional (default = false) | |
| - name: Archive code coverage results | |
| if: matrix.name == 'ubuntu-20.04-gcc-9' && matrix.build_type == 'Debug' | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: code-coverage-report | |
| path: ${{github.workspace}}/build/main_coverage.info | |
| retention-days: 30 |