All materials and analysis as Jupyter notebooks for Genetics paper.
-
Updated
Sep 12, 2017 - Jupyter Notebook
All materials and analysis as Jupyter notebooks for Genetics paper.
Estimating epistasis in trees for genetic programming problems
Approach to VARIantVARIant interaction through VARIable thresholds and hypothesis testing. VARI3 automates the selection and analysis of the most promising SNPs to identify epistasis.
A library for calculating penetrance tables of any bivariate epistasis model.
Non-linear Genetic Effects for Complex Traits
GWAS third-level epistatic search tool for cluster architectures
A Python tool to calculate penetrance tables for high-order epistasis models
The W-Model, a tunable Black-Box Discrete Optimization Benchmarking (BB-DOB) problem, implemented for the BB-DOB@GECCO Workshop.
Inference of Epistatic Gene Networks
A tool to predict missing data in sparsely sampled genotype-phenotype maps
Case-control genetics datasets evolved to be epistatic
Parallel Implementations of the Empirical Bayesian Elastic Net Cross-Validation in R
Jupyter notebooks for Genetics paper, "Detecting high-order epistasis in nonlinear genotype-phenotype maps"
The multivariate MArginal ePIstasis Test
Code and simulations using interaction-LD score regression
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)
Add a description, image, and links to the epistasis topic page so that developers can more easily learn about it.
To associate your repository with the epistasis topic, visit your repo's landing page and select "manage topics."