The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
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Updated
Jul 3, 2024 - R
The importance of converting relative to absolute abundance in the context of microbial ecology: Introducing the user-friendly DspikeIn R package
Amplicon sequencing analysis workflow using DADA2 and QIIME2
QIIME 2 plugin for analyzing biological pathway information based on gene family abundances
Comparative study of soil microbiome using QIIME2
Qiime2 Artifact eXtractor
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.
Command line tool that writes commands to run one by one to perform analyses (mainly using qiime2) on a HPC running Slurm, Torque or none of these.
Microbial community dynamics during key life-history transitions in the chemosymbiotic mussel, Gigantidas childressi
EXPOSIÇÃO AGUDA AO CHUMBO E SUA RELAÇÃO COM ALTERAÇÕES NO STATUS REDOX E DISBIOSE INTESTINAL EM RATOS
This repository describes the methods used to test different sci-kit learn feature selection methods as part of Qiime2 q2-classifier. It also contains raw data from the tax-credit project.
This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
Metagenomic analysis of the project: "PROGRAMAÇÃO METABÓLICA INDUZIDA PELA SUPERLACTAÇÃO E SEUS EFEITOS NA ATIVAÇÃO DO INFLAMASSOMA NLRP3 E EXPRESSÃO DO MIR-155 EM MODELO EXPERIMENTAL DE RESISTÊNCIA À INSULINA"
A Python package for microbiome sequencing analysis with QIIME 2
Materials and presentation for the 2023 ISB Microbiome course.
Code and raw data for *Galaxea fascicularis* microbiome data analysis
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