Program to determine the minimal RMSD between two atomic configurations
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Updated
Dec 24, 2023 - Fortran
Program to determine the minimal RMSD between two atomic configurations
Fortran code of Quaternion Characteristic Polynomial (QCP) superposition method
Python web app that compare, calculate and plot the mathematical differences between 2 sets of atomic coordinates
Calculates the per-residue atomic distance between two proteins
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats, using Pymol as a module
batchwise Kabsch test with Jimmy Charnley's calculate_rmsd (https://github.com/charnley/rmsd) on multiple CPUs
RMSD and B Factor Analysis
Clustering for molecular configurations
F@H Data Analysis: Root-mean-square Deviation & Radius of Gyration Calculations
Compute a moving root mean squared error (RMSE) incrementally.
Superimpose a set of protein structures and report a RSMD matrix, in CSV and Mega-compatible formats.
Compute the root mean squared error (RMSE) incrementally.
A program that compares a protein structure prediction to a solved structure and evaluates the prediction's accuracy using RMSD.
Project for analysis of protein structures in .pdb file format. It calculates some structure parameters and can compare two structures by calculating the RMSD.
📐 Implementation of the c-RMSD and d-RMSD algorithms
MODE-TASK plugin for PyMOL
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