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the colors switch multiple times between green (no emergency) orange (pot. emergency) and red (emergence) although visually there's just a flat line, with no indication of emergence (example Xenopus aevis) . This is probably because the confidence intervals in the middle of the times series are very small and even the slightest upward bend in the additive model will show 'emergence'. I dived into the code a bit. Maybe this effect can be avoided by relaxing the conditions for the lower ci in the 'apply_gam' function (example 0.01 instead of 0).
Just embedding a png example as link to picture could not be stable in the future.
damianooldoni
changed the title
Change emerging status due to negligible non zero values of 1st and 2nd derivative
Correct non relevant change of emerging status due to negligible non zero values of 1st and 2nd derivative
Jan 22, 2025
From @ToonVanDaele mail:
The solution proposed from @ToonVanDaele to check is to replace:
https://github.com/trias-project/trias/blob/main/R/apply_gam.R#L683
with
I propose the symmetric condition
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