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snippy-core bed file input with --mask [#475] #476

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snippy-core bed file input with --mask [#475] #476

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2 changes: 1 addition & 1 deletion bin/snippy-core
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Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@ if ($check) {
$fasta or err("Please provide --ref FASTA/GENBANK");
-r $fasta or err("Can't open --ref $fasta");

err("Can't read --bed $bed") if $bed and $bed ne 'auto' and !-f $bed;
err("Can't read --bed $bed") if $bed and $bed ne 'auto' and ! -f $bed;

length($gap_char)==1 or err("--gap-char must be a single character");
#length($pad_char)==1 or err("--pad-char must be a single character");
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