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Merge pull request #238 from savitakartik/gene_track_how_to
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Add gene track usage to readme
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benjeffery authored Dec 8, 2024
2 parents 5e7b45f + 7258a83 commit aff7de5
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8 changes: 7 additions & 1 deletion README.md
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Expand Up @@ -18,7 +18,13 @@ To launch the app use:

`python -m tsbrowse serve /path/to/tsbrowse-file`

Or to generate a PNG of a specific page use, e.g:
To display the genes track use:

`python -m tsbrowse serve /path/to/tsbrowse-file --annotations-file genes.`

(where `genes.csv` is a semicolon-separated text file containing no header and information about one gene on a row in the order: `chr;start;end;strand;ensembl ID;gene name`)

To generate a PNG of a specific page use, e.g:

`python -m tsbrowse screenshot /path/to/tsbrowse-file mutations`

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