Code

time windows in statistics#2948

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petrelharp wants to merge 19 commits intotskit-dev:maintskit-dev/tskit:mainfrom petrelharp:time_windowspetrelharp/tskit:time_windowsCopy head branch name to clipboard

+960-184

Commits

Commits on Oct 21, 2024

• example test for time windows

  

  petrelharp

  authored and

  tforest

  committed
  aeda4dc

• a little more flailing at beginning tests

  

  petrelharp

  authored and

  tforest

  committed
  0a30696

• first simple test for AFS in branch mode with time windows

  tforest

  committed
  1a988c0

• AFS non-naive version with time windows + Some tests

  tforest

  committed
  18ffda0

• Improve AFS branch mode

  tforest

  committed
  c6f9562

• fix AFS tests

  tforest

  committed
  7a3149f

• Fix naive branch general stat

  tforest

  committed
  71da7ad

• intermediate changes to C AFS implementation with time windows

  tforest

  committed
  2a44909

Commits on Oct 22, 2024

• tw afs C implementation

  tforest

  committed
  4460db9

• Better dimension drop with time windows

  tforest

  committed
  bbec6a9

• AFS branch mode with time windows to review

  tforest

  committed
  da5f205

Commits on Oct 30, 2024

• Adapting some tests with new time_windows parameter

  tforest

  committed
  6b3ab4f

• time_windows addition after code rebase

  tforest

  committed
  f2d857b

Commits on Oct 31, 2024

• Fix some tests failing because of time_windows

  tforest

  committed
  b8f4ba5

• Remove unused parameters in afs function

  tforest

  committed
  c9f6c06

• Fixing a memory issue in tsk_treeseq_update_branch_afs

  tforest

  committed
  59ea266

Commits on Nov 19, 2024

• Fixing some time_windows issues with AFS

  tforest

  committed
  96ac0ce

• Adjusting some stats tests using time_windows

  tforest

  committed
  26a7f09

Commits on Dec 11, 2024

• Adjusting some tests trying to pass codecov

  tforest

  committed
  8a8c05b