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Linting and tests

sklearn 1.3.1 update and xgboost 2.0 #443

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sklearn 1.3.1 update and xgboost 2.0

sklearn 1.3.1 update and xgboost 2.0 #443

Workflow file for this run

.github/workflows/config.yml at 9d3f09d
name: Linting and tests
on:
push:
branches:
- master
- development
pull_request:
branches:
- master
- development
jobs:
isort:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Check imports
uses: jamescurtin/isort-action@master
with:
sortPaths: atom tests
flake8:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: pip install flake8 flake8-pyproject
- name: Apply linting
run: flake8 --show-source --statistics atom tests
mypy:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: pip install mypy types-requests pandas-stubs
- name: Check type hints
run: mypy atom tests
code-quality-codeql:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Code quality analysis with CodeQL
uses: github/codeql-action/init@v2
with:
languages: python
code-quality-qodana:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Code quality analysis with Qodana
uses: JetBrains/qodana-action@main
env:
QODANA_TOKEN: ${{ secrets.QODANA_CLOUD }}
unit-tests:
runs-on: ${{ matrix.os }}
strategy:
matrix:
os: [ubuntu-latest, windows-latest]
python-version: ["3.9", "3.10", "3.11"]
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python ${{ matrix.python-version }} environment
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
python -m pip install -U pip
pip install -U pytest pytest-cov
pip install -e .[full]
- name: Run tests w/ coverage
run: pytest --cov=atom --cov-report=xml tests/
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.10' }}
with:
files: ./coverage.xml
examples-tests:
runs-on: ubuntu-latest
steps:
- name: Check out source repository
uses: actions/checkout@v3
- name: Set up Python environment
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install dependencies
run: |
python -m pip install -U pip
pip install -U pytest pytest-xdist nbmake scikeras tensorflow
pip install -e .[full]
- name: Run example notebooks
run: pytest --nbmake -n=auto --nbmake-timeout=600 --ignore=./examples/webapp/ --ignore=./examples/accelerating_cuml.ipynb ./examples/