fix test #511
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| name: Linting and tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - development | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| jobs: | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: pip install -U pip pre-commit | |
| - name: Apply isort | |
| run: pre-commit run isort --all-files | |
| ruff: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: pip install -U pip pre-commit | |
| - name: Apply linting | |
| run: pre-commit run ruff --all-files | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: pip install -U pip pre-commit | |
| - name: Check type hints | |
| run: pre-commit run mypy --all-files | |
| code-quality-codeql: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Code quality analysis with CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: python | |
| unit-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python ${{ matrix.python-version }} environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip setuptools | |
| pip install -U pytest pytest-mock pytest-cov pytest-xdist | |
| pip install -e .[full] | |
| pip install cmdstanpy==0.9.5 # Fixes https://github.com/facebook/prophet/issues/2354 | |
| - name: Run tests w/ coverage | |
| run: pytest -n=auto --cov=atom --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| with: | |
| files: ./coverage.xml | |
| examples-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free disk space | |
| run: | | |
| echo "==============================================" | |
| echo "Freeing up disk space on CI system" | |
| echo "==============================================" | |
| echo "Listing 100 largest packages" | |
| dpkg-query -Wf '${Installed-Size}\t${Package}\n' | sort -n | tail -n 100 | |
| df -h | |
| echo "Removing large packages" | |
| sudo apt-get remove -y '^dotnet-.*' | |
| sudo apt-get remove -y '^llvm-.*' | |
| sudo apt-get remove -y azure-cli google-cloud-cli google-chrome-stable firefox mono-devel | |
| sudo apt-get autoremove -y | |
| sudo apt-get clean | |
| df -h | |
| echo "Removing large directories" | |
| # deleting 15GB | |
| rm -rf /usr/share/dotnet/ | |
| df -h | |
| - name: Check out source repository | |
| uses: actions/checkout@v3 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -U pip setuptools | |
| pip install -U pytest pytest-xdist nbmake scikeras tensorflow | |
| pip install -e .[full] | |
| - name: Run example notebooks | |
| run: | | |
| pytest \ | |
| -n=auto \ | |
| --nbmake \ | |
| --nbmake-timeout=600 \ | |
| --ignore=./examples/webapp/ \ | |
| --ignore=./examples/accelerating_cuml.ipynb \ | |
| --ignore=./examples/ray_backend.ipynb \ | |
| ./examples/ |