config 1 #534
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Linting and tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - development | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| jobs: | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G lint --no-default | |
| - name: Run isort | |
| run: pdm run pre-commit run isort --all-files | |
| ruff: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G lint --no-default | |
| - name: Run ruff | |
| run: pdm run pre-commit run ruff --all-files | |
| pre-commit-hooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G lint --no-default | |
| - name: Run pre-commit hooks | |
| run: | | |
| pdm run pre-commit run check-added-large-files --all-files | |
| pdm run pre-commit run check-merge-conflict --all-files | |
| pdm run pre-commit run check-toml --all-files | |
| pdm run pre-commit run check-yaml --all-files | |
| pdm run pre-commit run end-of-file-fixer --all-files | |
| pdm run pre-commit run mixed-line-ending --all-files | |
| pdm run pre-commit run name-tests-test --all-files | |
| pdm run pre-commit run trailing-whitespace --all-files | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G lint --no-default | |
| - name: Run mypy | |
| run: pdm run pre-commit run mypy --all-files | |
| code-quality-codeql: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Code quality analysis with CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: python | |
| unit-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.10", "3.11", "3.12"] | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pdm install -G full -G test | |
| pip install cmdstanpy==0.9.5 # Fixes https://github.com/facebook/prophet/issues/2354 | |
| - name: Run tests w/ coverage | |
| run: pdm run pytest -n=auto --cov=atom --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v3 | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| with: | |
| files: ./coverage.xml | |
| examples-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free disk space | |
| run: | | |
| echo "==============================================" | |
| echo "Freeing up disk space on CI system" | |
| echo "==============================================" | |
| echo "Listing 100 largest packages" | |
| dpkg-query -Wf '${Installed-Size}\t${Package}\n' | sort -n | tail -n 100 | |
| df -h | |
| echo "Removing large packages..." | |
| sudo apt-get remove -y '^dotnet-.*' | |
| sudo apt-get remove -y '^llvm-.*' | |
| sudo apt-get remove -y azure-cli google-cloud-cli google-chrome-stable firefox mono-devel | |
| sudo apt-get autoremove -y | |
| sudo apt-get clean | |
| df -h | |
| echo "Removing large directories" | |
| # Deleting ~15GB | |
| rm -rf /usr/share/dotnet/ | |
| df -h | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G full -G test | |
| - name: Run example notebooks | |
| run: | | |
| pdm run pytest \ | |
| -n=auto \ | |
| --nbmake \ | |
| --nbmake-timeout=600 \ | |
| --ignore=./examples/webapp/ \ | |
| --ignore=./examples/accelerating_cuml.ipynb \ | |
| --ignore=./examples/ray_backend.ipynb \ | |
| ./examples/ | |
| documentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G doc --no-default | |
| - name: Build documentation | |
| run: pdm run mkdocs build --strict --site-dir /home/runner/work/ATOM/ATOM/docs_sources/ | |
| documentation2: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm install -G doc --no-default | |
| - name: Build documentation | |
| run: mkdocs build --strict |