upgrade deps #571
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| name: Linting and tests | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - development | |
| pull_request: | |
| branches: | |
| - master | |
| - development | |
| jobs: | |
| isort: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm sync -G lint --no-default | |
| - name: Run isort | |
| run: pdm run pre-commit run isort --all-files | |
| ruff: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm sync -G lint --no-default | |
| - name: Run ruff | |
| run: pdm run pre-commit run ruff --all-files | |
| pre-commit-hooks: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm sync -G lint --no-default | |
| - name: Run pre-commit hooks | |
| run: | | |
| pdm run pre-commit run check-added-large-files --all-files | |
| pdm run pre-commit run check-merge-conflict --all-files | |
| pdm run pre-commit run check-toml --all-files | |
| pdm run pre-commit run check-yaml --all-files | |
| pdm run pre-commit run end-of-file-fixer --all-files | |
| pdm run pre-commit run mixed-line-ending --all-files | |
| pdm run pre-commit run name-tests-test --all-files | |
| pdm run pre-commit run trailing-whitespace --all-files | |
| mypy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm sync -G lint --no-default | |
| - name: Run mypy | |
| run: pdm run pre-commit run mypy --all-files | |
| code-quality-codeql: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up Python environment | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.11" | |
| - name: Code quality analysis with CodeQL | |
| uses: github/codeql-action/init@v3 | |
| with: | |
| languages: python | |
| unit-tests: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, windows-latest] | |
| python-version: ["3.10", "3.11"] | |
| steps: | |
| - name: Free disk space windows | |
| shell: bash | |
| run: | | |
| df -h | |
| rm -rf /usr/share/dotnet/ | |
| rm -rf /opt/ghc | |
| rm -rf /usr/local/share/boost | |
| rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pdm sync -G full -G test | |
| pip install cmdstanpy==0.9.5 # Fixes https://github.com/facebook/prophet/issues/2354 | |
| - name: Run tests w/ coverage | |
| shell: bash | |
| run: | | |
| export PYTHONPATH="${PYTHONPATH}:$(pwd)" | |
| pdm run pytest -n=auto --cov=atom --cov-report=xml tests/ | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| if: ${{ matrix.os == 'ubuntu-latest' && matrix.python-version == '3.11' }} | |
| with: | |
| files: ./coverage.xml | |
| examples-tests: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free disk space | |
| run: | | |
| df -h | |
| rm -rf /usr/share/dotnet/ | |
| rm -rf /opt/ghc | |
| rm -rf /usr/local/share/boost | |
| rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: pdm sync -G full -G test | |
| - name: Run example notebooks | |
| run: | | |
| export PYTHONPATH="${PYTHONPATH}:$(pwd)" | |
| pdm run pytest \ | |
| -n=auto \ | |
| --nbmake \ | |
| --nbmake-timeout=600 \ | |
| --ignore=./examples/webapp/ \ | |
| --ignore=./examples/accelerating_cuml.ipynb \ | |
| --ignore=./examples/ray_backend.ipynb \ | |
| ./examples/ | |
| documentation: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Free disk space | |
| run: | | |
| df -h | |
| rm -rf /usr/share/dotnet/ | |
| rm -rf /opt/ghc | |
| rm -rf /usr/local/share/boost | |
| rm -rf "$AGENT_TOOLSDIRECTORY" | |
| df -h | |
| - name: Check out source repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up pdm | |
| uses: pdm-project/setup-pdm@v4 | |
| with: | |
| python-version: "3.11" | |
| cache: true | |
| - name: Install dependencies | |
| run: | | |
| pdm sync -G full -G doc | |
| pip install cmdstanpy==0.9.5 | |
| - name: Build documentation | |
| run: | | |
| export PYTHONPATH="${PYTHONPATH}:$(pwd)" | |
| pdm run mkdocs build --strict |