The Chromatin Accessibility of Rice Tissues (CART)

Chromatin accessibility in multiple tissues throughout the entire cycle of rice.

Data Availability

The files used by each notebook are available on figshare.

Sample

Sample Sheet

#	Abbreviations	Tissue	Sampling stage
1	AM1	Apical Meristem	4-5 leaf stage
2	AM2	Apical Meristem	45 days after planting
3	Callus	Callus	14 days after regeneration
4	DBuds	Dormant buds	less than 10 mm
5	Leaf	Leaf	4-5 leaf stage
6	Sheath	Sheath	4-5 leaf stage
7	Lemma	Lemma	Heading state
8	Palea	Palea	Heading state
9	PNN	Panicle neck node	Heading state
10	Pistil	Pistil	Heading state
11	Plumule	Plumule	48 h after germination
12	Radicle	Radicle	48 h after germination
13	Root	Root	4-5 leaf stage
14	SAM1	Shoot Apical Meristem	4-5 leaf stage
15	SAM2	Shoot Apical Meristem	30 days after planting
16	SAM3	Shoot Apical Meristem	45 days after planting
17	Seed1	Seed coat(3C)	3 days after flowering
18	Seed2	Seed coat	3 days after flowering
19	Seed3	Seed coat	7 days after flowering
20	Stamen	Stamen	Heading state
21	Stem	Stem	Heading state
22	Panicle1	Young Panicle	less than 1mm
23	Panicle2	Young Panicle	1-2 mm
24	Panicle3	Young Panicle	3-5 mm
25	Panicle4	Young Panicle	5-10 mm

Database

CART

Publication

Zhu, T., Xia, C., Yu, R. et al. Comprehensive mapping and modelling of the rice regulome landscape unveils the regulatory architecture underlying complex traits. Nat Commun 15, 6562 (2024). https://doi.org/10.1038/s41467-024-50787-y